Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01206 ATGTTTCCAACTAACAACTCTTCCTCTTCACACCCCATTACCTCAATACCTTCCTCTTCCTCCCACAAAATATCTCTTCCAAATTTAGATGTCTCTCATGATATGTCAACTTCCAACGAGGAGGTGCGGTTAGCTGCGAGTACCCCGAAGAAGCGTGGAGGGAGAAAGAAGTTCAAGGAGACTCGCCACCCGGTGTATAGGGGTGTAAGGAGCAGGAACTTAGATAAATGGGTGTGTGAAATGAGAGAGCCTAACAAGAAAACTAAAATTTGGCTAGGGACATTTCAAACGGCCGAAATGGCAGCCCGAGCCCATGATGTCGCGGCATTGGCATTGAGAGGTCGCAATGCTTGTCTCAACTTTGTAGACTCAGCTTGGCGGCTTCGTATGCCTACCACTACCGAGACAAAAGATATTCAAAAGGCAGCCGCAGAAGCTGCAGAGGCTTTCAATTTCAAACCAGACAAAACTTTAATGATTAATGACACTAACACGGTTGAAGTAGCCGCCTCTATAGAGAAGCGGCTTATGTTTAGTATGGAAGAGGAAGAAGAGAAGTTGAACATTCCAGAGTCATTGAGAAATATGGCACTAATGTCCCCAACACATAGCTTAGGGCATGAGTATGAACATATTGATCATCATGTAGACTTTCAAGATGTTGAGGTGTCACTATGGAGTTTTTCAATTTGA 693 0.443 MFPTNNSSSSHPITSIPSSSSHKISLPNLDVSHDMSTSNEEVRLAASTPKKRGGRKKFKETRHPVYRGVRSRNLDKWVCEMREPNKKTKIWLGTFQTAEMAARAHDVAALALRGRNACLNFVDSAWRLRMPTTTETKDIQKAAAEAAEAFNFKPDKTLMINDTNTVEVAASIEKRLMFSMEEEEEKLNIPESLRNMALMSPTHSLGHEYEHIDHHVDFQDVEVSLWSFSI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01206 230 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Trre12g01206 230 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Trre12g01206 230 MobiDBLite consensus disorder prediction 1 58 - -
Trre12g01206 230 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Trre12g01206 230 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Trre12g01206 230 PIRSF PTI6 141 230 IPR017392 GO:0003700
Trre12g01206 230 PIRSF PTI6 4 156 IPR017392 GO:0003700
Trre12g01206 230 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Trre12g01206 230 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Trre12g01206 230 MobiDBLite consensus disorder prediction 1 44 - -
Trre12g01206 230 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Trre12g01206 230 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Trre12g01206 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 227 IPR045277 GO:0003700
Trre12g01206 230 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01206 Trre-Chr12 12037941 12038633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01206 43 228 AP2-EREBP Transcription Factor Family AT4G25470 54.315 3.02e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g01206 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01206 - K09286 psat:127130221 318.546