Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01204 ATGAAGACCTTTTCCCACTCTCACCATCACATACATATGTTTCCAACTGACAACTTTTCTTCTTCCTCGGACATTTCATTGTTGAATTCAGAGGGCTCTCATTGGAAGCCTGTTTCTAACGAGGAGATGAGGTTAGCTGCGACTACCCCGAAGAAGCGTGCAGGGAGGAAGATTTTCAAGGAGACTCGCCACCCAGTGTATAGGGGTGTGAGGAAGAGGAACAATGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAAAAAACTAAGATTTGGCTAGGGACTTTTCCAACGGTCGAGATGGCAGCACGAGCCCATGATGTTGCCGCAATGGCATTAAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCAGTGTGGCGGCTCCCTAAACCTGCCACCGCTCAAGCAAAAGATATACAAAAAGCAGCTACACAAGCCGCCGAGGCATTCAGGCCAAAGAAGATTTTATTGACTAGTGACAATGACATGAGTGTAGTTGTCGCCGCCACAGAGGAACAACCTATGCTTTGTAGGGAAGAAGAAGAAGAAGAAGAAGAAGAGGGAGTGATGAACATGCCAGAGTTGTTGAGTAATATGGCGCTAATGTCTCCTATGCATAGCTTGGAGAATGAGTTCTATGAAGAAGAAGAAGTGATGAACATGCCAGAGTTGTGGAGCAATATGGCGCTAATGTCCCCTGCACATAGCTTGGAGTATTATGACTATGAATATGTTAATGAAGACTTTCAAGATGCTGAGATATCACTATGGAATTATTAA 783 0.4521 MKTFSHSHHHIHMFPTDNFSSSSDISLLNSEGSHWKPVSNEEMRLAATTPKKRAGRKIFKETRHPVYRGVRKRNNDKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGRYACLNFADSVWRLPKPATAQAKDIQKAATQAAEAFRPKKILLTSDNDMSVVVAATEEQPMLCREEEEEEEEEGVMNMPELLSNMALMSPMHSLENEFYEEEEVMNMPELWSNMALMSPAHSLEYYDYEYVNEDFQDAEISLWNY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01204 260 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Trre12g01204 260 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Trre12g01204 260 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Trre12g01204 260 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Trre12g01204 260 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Trre12g01204 260 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 208 IPR045277 GO:0003700
Trre12g01204 260 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Trre12g01204 260 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Trre12g01204 260 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
Trre12g01204 260 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01204 Trre-Chr12 12014648 12015430 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01204 14 260 AP2-EREBP Transcription Factor Family AT5G51990 45.703 1.16e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g01204 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01204 - - mtr:25497250 282.722