Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01203 ATGTCCTTGTCGAATTCCGAGGGCTCTCACTGGATGTCAGTGCCTAATGAGGAGATGCAGTTAGCTGCGAGTACTCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCAATCTATAGGGGTGTGAGGAAGAGGAACAACGATAAATGGGTTTGTGAAATGAGAGAGCCTAACAAAAAGACTAAGATTTGGCTAGGCACTTTTCCAACGGTCGAAATGGCAGCCCGTGCACATGATGTTGCCTCAATAGCATTAAGGGGCCGCTACGCTTGTCTCAACTTTGCAGACTCAGTGTGGCGGCTCCCTAAACCTGCTACCAATGAGGCAAAAGATATACAAAAGGCGGCTACTGAAGCCGCCGAGCTATTCAGACCAGAGAAGATTTTAATGACTAATGACAATGACAATAATAACATGGCGGTAATTGCCGCGGCCGCTACGGAGGAGCAGAGTAGGCTTTGTCCGGAAGAGGAAGAAATGGAAGCAATGGACATGCAAGAGATGTGGAGGAATATGGCACTCATGTCCCCTACACCTAGCTTTGACTATGAGTATGAAGATAATATGCATGACTTTCAAGATGAAGAGGATTTTAAAAAATGGTTTGCAACCATATGA 630 0.4667 MSLSNSEGSHWMSVPNEEMQLAASTPKKRAGRKKFKETRHPIYRGVRKRNNDKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVASIALRGRYACLNFADSVWRLPKPATNEAKDIQKAATEAAELFRPEKILMTNDNDNNNMAVIAAAATEEQSRLCPEEEEMEAMDMQEMWRNMALMSPTPSFDYEYEDNMHDFQDEEDFKKWFATI 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01203 209 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre12g01203 209 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Trre12g01203 209 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Trre12g01203 209 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Trre12g01203 209 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Trre12g01203 209 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Trre12g01203 209 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Trre12g01203 209 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 205 IPR045277 GO:0003700
Trre12g01203 209 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Trre12g01203 209 MobiDBLite consensus disorder prediction 1 35 - -
Trre12g01203 209 FunFam Ethylene-responsive transcription factor 2 41 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01203 Trre-Chr12 12004408 12009370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01203 20 205 AP2-EREBP Transcription Factor Family AT4G25470 55.263 1.50e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre12g01203 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01203 - K09286 mtr:25497250 279.256