Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01202 ATGTTTGCTAGTAAAATGTCTTCCTATTCACATCTCATTTCCTCAAAAGATGTTGATGGTGAGATGCGGTTAGCCGCGAGTAACCCGAAGAAACGAGCGGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGGGGTGTGAGGAAGAGGAATTTAGATAAATGGGTTTGTGAAATGAGGGAGCCAAACAAAAAGACTAGGATTTGGCTAGGCACTTTTCCAACGGCCGAGATGGCAGCCCGAGCACACGATGTTGCGGCTTTGGCATTGAGGGGTCGTTACGCTTGTCTCAATTTCGCAGACTCAGTGTGGCGTCTTCCTATTCCAGCTACCTCTGAGACAAAAGATATTCAAAAGGCAGCTACAGAAGCAGCCGAGGCTTTTAGACCGGAAAAGATTTTAAGGACTAATGACATTGAAACAGTTATAGCTGTTGTAGCCGCAAAGGAGTTGAGTATGTTTGTTGTGGAAGTCGAAGAAGAAGAAGAGGACGAGGCGCTAAGACTGGAAAAGACTTTAAAGTTTAATGACATTGAAACAGTTATAGCTGTTGTCGCCGCAAAGGAGTTGAATATGTTTGTTGTGGAAGTTGAAGAAGAAGAAGAGGAGGAAATGATGAATATGCCGGAATTATGGAGGAATATGGTGCTAATGTCCCCTACACATAGCTTGGAGTATGAGTATGAAGATATTGATGTAGGTGAATTTCAAGATGTGTCACTATGGAACTTTTAA 741 0.4332 MFASKMSSYSHLISSKDVDGEMRLAASNPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAALALRGRYACLNFADSVWRLPIPATSETKDIQKAATEAAEAFRPEKILRTNDIETVIAVVAAKELSMFVVEVEEEEEDEALRLEKTLKFNDIETVIAVVAAKELNMFVVEVEEEEEEEMMNMPELWRNMVLMSPTHSLEYEYEDIDVGEFQDVSLWNF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01202 246 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Trre12g01202 246 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Trre12g01202 246 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Trre12g01202 246 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Trre12g01202 246 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Trre12g01202 246 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Trre12g01202 246 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Trre12g01202 246 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Trre12g01202 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 245 IPR045277 GO:0003700
Trre12g01202 246 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01202 Trre-Chr12 11969644 11970384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01202 7 246 AP2-EREBP Transcription Factor Family AT4G25470 47.107 4.65e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g01202 AP2 8.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01202 - K09286 mtr:25497241 281.567