Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g01197 | ATGGCCACTATAACAACAACACTGTGCCATTACCACTTTCCTCTATCATCATCTTCCTTCAAAATCCACAAACCAATACTCTCACACTCCCCGCGTCATCTCACTCTCCCCTTCAAATTCCAACCAAAAACCATTCCATCTCGTTTTCCTCTTTCCCAACCGCCACGCGCATATGTCACCGGACCTGCATCCGACCCGAATGTTGCTGAATCGGATCCGAAACTTGACGGGTTGAAACAAGAAGAACCATACATACCCAAGGTTATTACATGGGAGCTTCTTTCTTTGCTTCTTCTTAAGCATAAATTTCGTCTTGCTGTTTGTGTTGCTTCTCTCTTTGCCTGCACCACCTGTACCCTATCCATGCCCATTTTTTCTGGACGATTTTTTGAAGTTCTTATTGGTGTCAGACCTGAGCCATTGTGGAGTCTTCTCAGTAAAATGGGAGTTCTGTATGCACTAGAGCCACTTTTTACAGTTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAGTTATGTCAACACTAAGAGCTCAAATCTTTGGAAAATTATTGATTCAGAAGGTCGAATTTTTTGACAAATACAAGGTAGGCGAAATCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAAATATTGTCAGTGAGAATGTTTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCACTGGAACAATATTCATTCTTTTTACTTTATCCCCTCAACTGGCTCCAATTCTTGGTGTTCTGATGATCGCAGTTTCCGTTTCAATCGCTGTCTACAAGAGATCAACTTTGCCTGTTTTTATAGAACATGGTTTGGCCCAAGCATCTATCTCTGATTGTATAACAGAAACATTTTCTGCTATTAGAACAGTGCGATCTTTTAGTGGAGAAAAGCGCCAAATGTTTACGTTTGCTAACCAGGTTCTATCGTTCCAATTGAGTGGTATAAAGCTTGGAACTTTCAAATCTATTAACGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATTTCTCTGTATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTCAACTCTCTGTTGGAACTATGGCATCTTTTATTGGATATACATTCACTTTAACATTTGCTGTTCAAGGTTTGGTTAATACTTTTGGAGATCTTCGTGGATCTCTTGCGGCTGTTGAGAGGATCAACTCTGTTTTGTCTGGTGTTCAAGTTGATGATGCACTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAGCAGTGAACAATGACAACCTTAAATTGTTCTTCTCTGATGGTTCTTCTGAGAAAAACCAAAATAATCATTTGCATTACATGTCAGCATTAAAAACATCGACTAATCTGTTTAGCTTAGCTTGGTCTGGAGATATTTGTCTTGAAGATGTTTATTTCTCTTATCCTCTAAGGCCAGATGTGGAAATTTTGCGTGGCTTAAACTTAAGACTAAAATGTGGAACTGTAACTGCACTAGTAGGTGCTAGTGGTGCAGGAAAGAGTACAATAGTACAGCTATTGTCTCGTTTTTATGAGCCAGCAAGAGGTTGTATAACAGTTGGTGGAGAAGATGTCCGAACATTTGATAAAAGTGAATGGGCCCGGGTTGTTTCTATCGTAAATCAAGAACCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGACTTCCAGATGACGATGTTTCTAAAGACGATGTGATTAAGGCAGCAAAGGCGGCAAATGCTCATGAATTTATAATTTCACTTCCACAGGGCTACGATACACTTGTTGGTGAGCGTGGAGGCTTACTGAGTGGAGGACAGAGGCAGAGAATCGCCATTGCCCGAGCTCTTTTGAAGAATGCTCCCATCCTTATACTTGATGAGGCTACAAGTGCCTTGGATACCGTCAGTGAGCGCTTGGTCCAAGATGCTCTCAACCGTTTGATGAACGGTAGGACAACATTAGTCATAGCTCACAGATTAAGCACAGTACAAAATGCACATCAAATTGCGCTATGTTCAGATGGAAGGATTGCAGAACTAGGCACTCATTTTGAGTTATTGGCTAAGAAGGGCCAATACGCTTCATTGGTTGGCAATCAAAGGCTCGCATTTGAATAG | 2133 | 0.4065 | MATITTTLCHYHFPLSSSSFKIHKPILSHSPRHLTLPFKFQPKTIPSRFPLSQPPRAYVTGPASDPNVAESDPKLDGLKQEEPYIPKVITWELLSLLLLKHKFRLAVCVASLFACTTCTLSMPIFSGRFFEVLIGVRPEPLWSLLSKMGVLYALEPLFTVIFVINMNIVWEKVMSTLRAQIFGKLLIQKVEFFDKYKVGEITGLLTSDLGSLKNIVSENVSRDRGFRALSEVTGTIFILFTLSPQLAPILGVLMIAVSVSIAVYKRSTLPVFIEHGLAQASISDCITETFSAIRTVRSFSGEKRQMFTFANQVLSFQLSGIKLGTFKSINESLTRVAVYISLISLYCLGGSKVKAGQLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSLAAVERINSVLSGVQVDDALAYGLERELKQKAVNNDNLKLFFSDGSSEKNQNNHLHYMSALKTSTNLFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGASGAGKSTIVQLLSRFYEPARGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDDVSKDDVIKAAKAANAHEFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDTVSERLVQDALNRLMNGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAKKGQYASLVGNQRLAFE | 710 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g01197 | 710 | SMART | AAA_5 | 493 | 687 | IPR003593 | GO:0016887 | |
Trre12g01197 | 710 | Gene3D | ABC transporter type 1, transmembrane domain | 75 | 403 | IPR036640 | GO:0005524|GO:0016020 | |
Trre12g01197 | 710 | FunFam | ATP-binding cassette sub-family B member 8, mitochondrial | 464 | 708 | - | - | |
Trre12g01197 | 710 | SUPERFAMILY | ABC transporter transmembrane region | 87 | 397 | IPR036640 | GO:0005524|GO:0016020 | |
Trre12g01197 | 710 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 81 | 708 | IPR039421 | - | |
Trre12g01197 | 710 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 106 | 389 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre12g01197 | 710 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 466 | 704 | IPR003439 | GO:0005524 | |
Trre12g01197 | 710 | Pfam | ABC transporter | 484 | 635 | IPR003439 | GO:0005524 | |
Trre12g01197 | 710 | CDD | ABC_MTABC3_MDL1_MDL2 | 466 | 705 | - | - | |
Trre12g01197 | 710 | ProSitePatterns | ABC transporters family signature. | 607 | 621 | IPR017871 | GO:0005524|GO:0016887 | |
Trre12g01197 | 710 | Pfam | ABC transporter transmembrane region | 107 | 376 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre12g01197 | 710 | Gene3D | - | 464 | 707 | IPR027417 | - | |
Trre12g01197 | 710 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 458 | 705 | IPR027417 | - | |
Trre12g01197 | 710 | CDD | ABC_6TM_TAP_ABCB8_10_like | 111 | 397 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g01197 | Trre-Chr12 | 11909252 | 11916227 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g01197 | 463 | 710 | Calmodulin-binding Proteins | AT2G36910 | 54.183 | 3.06e-74 | 259 |