Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01197 ATGGCCACTATAACAACAACACTGTGCCATTACCACTTTCCTCTATCATCATCTTCCTTCAAAATCCACAAACCAATACTCTCACACTCCCCGCGTCATCTCACTCTCCCCTTCAAATTCCAACCAAAAACCATTCCATCTCGTTTTCCTCTTTCCCAACCGCCACGCGCATATGTCACCGGACCTGCATCCGACCCGAATGTTGCTGAATCGGATCCGAAACTTGACGGGTTGAAACAAGAAGAACCATACATACCCAAGGTTATTACATGGGAGCTTCTTTCTTTGCTTCTTCTTAAGCATAAATTTCGTCTTGCTGTTTGTGTTGCTTCTCTCTTTGCCTGCACCACCTGTACCCTATCCATGCCCATTTTTTCTGGACGATTTTTTGAAGTTCTTATTGGTGTCAGACCTGAGCCATTGTGGAGTCTTCTCAGTAAAATGGGAGTTCTGTATGCACTAGAGCCACTTTTTACAGTTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAGTTATGTCAACACTAAGAGCTCAAATCTTTGGAAAATTATTGATTCAGAAGGTCGAATTTTTTGACAAATACAAGGTAGGCGAAATCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAAATATTGTCAGTGAGAATGTTTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCACTGGAACAATATTCATTCTTTTTACTTTATCCCCTCAACTGGCTCCAATTCTTGGTGTTCTGATGATCGCAGTTTCCGTTTCAATCGCTGTCTACAAGAGATCAACTTTGCCTGTTTTTATAGAACATGGTTTGGCCCAAGCATCTATCTCTGATTGTATAACAGAAACATTTTCTGCTATTAGAACAGTGCGATCTTTTAGTGGAGAAAAGCGCCAAATGTTTACGTTTGCTAACCAGGTTCTATCGTTCCAATTGAGTGGTATAAAGCTTGGAACTTTCAAATCTATTAACGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATTTCTCTGTATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTCAACTCTCTGTTGGAACTATGGCATCTTTTATTGGATATACATTCACTTTAACATTTGCTGTTCAAGGTTTGGTTAATACTTTTGGAGATCTTCGTGGATCTCTTGCGGCTGTTGAGAGGATCAACTCTGTTTTGTCTGGTGTTCAAGTTGATGATGCACTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAGCAGTGAACAATGACAACCTTAAATTGTTCTTCTCTGATGGTTCTTCTGAGAAAAACCAAAATAATCATTTGCATTACATGTCAGCATTAAAAACATCGACTAATCTGTTTAGCTTAGCTTGGTCTGGAGATATTTGTCTTGAAGATGTTTATTTCTCTTATCCTCTAAGGCCAGATGTGGAAATTTTGCGTGGCTTAAACTTAAGACTAAAATGTGGAACTGTAACTGCACTAGTAGGTGCTAGTGGTGCAGGAAAGAGTACAATAGTACAGCTATTGTCTCGTTTTTATGAGCCAGCAAGAGGTTGTATAACAGTTGGTGGAGAAGATGTCCGAACATTTGATAAAAGTGAATGGGCCCGGGTTGTTTCTATCGTAAATCAAGAACCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGACTTCCAGATGACGATGTTTCTAAAGACGATGTGATTAAGGCAGCAAAGGCGGCAAATGCTCATGAATTTATAATTTCACTTCCACAGGGCTACGATACACTTGTTGGTGAGCGTGGAGGCTTACTGAGTGGAGGACAGAGGCAGAGAATCGCCATTGCCCGAGCTCTTTTGAAGAATGCTCCCATCCTTATACTTGATGAGGCTACAAGTGCCTTGGATACCGTCAGTGAGCGCTTGGTCCAAGATGCTCTCAACCGTTTGATGAACGGTAGGACAACATTAGTCATAGCTCACAGATTAAGCACAGTACAAAATGCACATCAAATTGCGCTATGTTCAGATGGAAGGATTGCAGAACTAGGCACTCATTTTGAGTTATTGGCTAAGAAGGGCCAATACGCTTCATTGGTTGGCAATCAAAGGCTCGCATTTGAATAG 2133 0.4065 MATITTTLCHYHFPLSSSSFKIHKPILSHSPRHLTLPFKFQPKTIPSRFPLSQPPRAYVTGPASDPNVAESDPKLDGLKQEEPYIPKVITWELLSLLLLKHKFRLAVCVASLFACTTCTLSMPIFSGRFFEVLIGVRPEPLWSLLSKMGVLYALEPLFTVIFVINMNIVWEKVMSTLRAQIFGKLLIQKVEFFDKYKVGEITGLLTSDLGSLKNIVSENVSRDRGFRALSEVTGTIFILFTLSPQLAPILGVLMIAVSVSIAVYKRSTLPVFIEHGLAQASISDCITETFSAIRTVRSFSGEKRQMFTFANQVLSFQLSGIKLGTFKSINESLTRVAVYISLISLYCLGGSKVKAGQLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSLAAVERINSVLSGVQVDDALAYGLERELKQKAVNNDNLKLFFSDGSSEKNQNNHLHYMSALKTSTNLFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGASGAGKSTIVQLLSRFYEPARGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDDVSKDDVIKAAKAANAHEFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDTVSERLVQDALNRLMNGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAKKGQYASLVGNQRLAFE 710
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01197 710 SMART AAA_5 493 687 IPR003593 GO:0016887
Trre12g01197 710 Gene3D ABC transporter type 1, transmembrane domain 75 403 IPR036640 GO:0005524|GO:0016020
Trre12g01197 710 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 464 708 - -
Trre12g01197 710 SUPERFAMILY ABC transporter transmembrane region 87 397 IPR036640 GO:0005524|GO:0016020
Trre12g01197 710 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 81 708 IPR039421 -
Trre12g01197 710 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 106 389 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g01197 710 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 466 704 IPR003439 GO:0005524
Trre12g01197 710 Pfam ABC transporter 484 635 IPR003439 GO:0005524
Trre12g01197 710 CDD ABC_MTABC3_MDL1_MDL2 466 705 - -
Trre12g01197 710 ProSitePatterns ABC transporters family signature. 607 621 IPR017871 GO:0005524|GO:0016887
Trre12g01197 710 Pfam ABC transporter transmembrane region 107 376 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g01197 710 Gene3D - 464 707 IPR027417 -
Trre12g01197 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 458 705 IPR027417 -
Trre12g01197 710 CDD ABC_6TM_TAP_ABCB8_10_like 111 397 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre12g01197 Trre-Chr12 11909252 11916227 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01197 463 710 Calmodulin-binding Proteins AT2G36910 54.183 3.06e-74 259