Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01195 ATGGATTTTGACGGTGGTAACAAGCGTGTTTATAACCGACTCGGTGGTTCTAACGGTGGAGGTGATTCAAAGAATCAGAAAGTGTGTTTTCAATGGCAAGCAGGGAAGTGTAATCGTTATCCATGTCCATTTTTGCATAGTGAGTTACCTACTTCTAATGGAAATGGTGCACCTTCAAAGCGGCCTTATGCTGATAATTCGGGTTTTTCGGGTAACCGGCGTGGTGGTGGTTCGAGTTTTAATACGTGGGGGCCAGGGCGTGGTGGTGGACGTAGTCGCGGTGGTGGCCGTGGTTCTGTAGGAGGTGGTGGTAGAGGTGTTGTTGTGAATGTTGAAAAAGTTTGCACCTATTGGATTCAAGGAACTTGTAGTTATGGAGATAGGTGTAAGTTTCTTCATTCTTGGAGTTTAGGGGATGGTTTTTCTTTATTGACTCAGCTTGAAGGACATAAGAAGGTTGTGAGTGGAATTGCTATGCCTTCTGGTTCGGATAAGCTTTATACTGGAAGTACTGATGAGACAGTAAGGGCTTGGGACTGCCAGTCTGGACAGTGTATAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCCTGGCTTTTTGTTGGCATACCCAATTTTGTTAAGGCCTGGAACACACAAAATTCAATGGAGATAAGTCTAGATGGCCCTGTTGGACAAGTTTATGCGCTTGTTGTGATTAATGATATGCTCTTTGCTGGTACGCAGGATGGAGCTATATTAGTGTGGAAGTTTAATGTAGCTGCCAACTGTTTTGAGCCTGCTGCATCGCTTAAAGGCCACACGCGTGGTGTTGTTTCATTAGTTGTTGGTGCTAATAGACTTTATTCTGGTTCAATGGACAATACAATTAGAGTGTGGAACCTTGAAACTTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCCGTTCTTTGCTGGGATCAGTTCCTTATATCCTGTTCATTAGACAAAACAGTAAAGGTGTGGTTTGCTACAGAAACTGGGAATTTGGAAGTGACATATACTCACACTGAAGAACATGGTATACTCACCCTCTGTGGGATGCATGATTCACACGGCAAGCCTATATTGATGTGTTCTTGCAATGATAACACTGTTCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATATTCAACAAACTAGAAGTGCGGGCAATTCAGACCGGTCCTGGTAGCATATTCTTCACCGGTGATGGAACCGGCCAAGTGAGAGTGTGGAATTGGATACCTGAGCCAGTGGCGGCTAATAGCACCCAATAA 1320 0.4424 MDFDGGNKRVYNRLGGSNGGGDSKNQKVCFQWQAGKCNRYPCPFLHSELPTSNGNGAPSKRPYADNSGFSGNRRGGGSSFNTWGPGRGGGRSRGGGRGSVGGGGRGVVVNVEKVCTYWIQGTCSYGDRCKFLHSWSLGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRAWDCQSGQCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMEISLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLISCSLDKTVKVWFATETGNLEVTYTHTEEHGILTLCGMHDSHGKPILMCSCNDNTVRLYDLPSFAERGKIFNKLEVRAIQTGPGSIFFTGDGTGQVRVWNWIPEPVAANSTQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01195 439 SMART c3hfinal6 24 48 IPR000571 GO:0046872
Trre12g01195 439 SMART c3hfinal6 111 135 IPR000571 GO:0046872
Trre12g01195 439 Gene3D - 122 227 IPR015943 GO:0005515
Trre12g01195 439 Gene3D - 228 437 IPR015943 GO:0005515
Trre12g01195 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 179 - -
Trre12g01195 439 MobiDBLite consensus disorder prediction 53 101 - -
Trre12g01195 439 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Trre12g01195 439 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Trre12g01195 439 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Trre12g01195 439 ProSiteProfiles Zinc finger C3H1-type profile. 23 49 IPR000571 GO:0046872
Trre12g01195 439 FunFam Zinc finger CCCH domain-containing protein 48 135 225 - -
Trre12g01195 439 SMART WD40_4 219 256 IPR001680 GO:0005515
Trre12g01195 439 SMART WD40_4 263 300 IPR001680 GO:0005515
Trre12g01195 439 SMART WD40_4 390 427 IPR001680 GO:0005515
Trre12g01195 439 SMART WD40_4 303 340 IPR001680 GO:0005515
Trre12g01195 439 SMART WD40_4 140 179 IPR001680 GO:0005515
Trre12g01195 439 SMART WD40_4 344 387 IPR001680 GO:0005515
Trre12g01195 439 PANTHER - 112 435 IPR044715 -
Trre12g01195 439 FunFam Zinc finger CCCH domain-containing protein 48 227 435 - -
Trre12g01195 439 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Trre12g01195 439 Pfam Zinc finger domain 115 133 - -
Trre12g01195 439 SUPERFAMILY WD40 repeat-like 120 428 IPR036322 GO:0005515
Trre12g01195 439 Pfam WD domain, G-beta repeat 143 179 IPR001680 GO:0005515
Trre12g01195 439 Pfam WD domain, G-beta repeat 267 300 IPR001680 GO:0005515
Trre12g01195 439 Pfam WD domain, G-beta repeat 305 339 IPR001680 GO:0005515
Trre12g01195 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 188 IPR001680 GO:0005515
Trre12g01195 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 303 - -
Trre12g01195 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 309 IPR001680 GO:0005515
Trre12g01195 439 ProSiteProfiles Zinc finger C3H1-type profile. 110 136 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01195 Trre-Chr12 11899075 11903395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01195 137 311 Eukaryotic Initiation Factors Gene Family AT2G46290 24.365 4.56e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre12g01195 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01195 - - mtr:25497231 806.594