Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01183 ATGTCTTCTAAATATAATGATACATTTACTCAAATTAAAACATGCATATACCTGCCTCCGCGGGTAAATTCGCAGAAACCATGGTTCCAAATGACCGATACTCGCTCGTTTTTACAAAATTCTTTGCCTGTGTTGCAGATACAAATATGTTTGATCTTTTTTGGAACTCTTTTCTTCAAATATATATTATGTCGTTTTGGAATCCCCAAGTTCACATCTATGAGCATTGTTGGTCTAATCTTTGCAGCTACATTCAATAATAATTGGACTGGAAAATTGAAGATGATATTTTCCTTTGATTCACAAGAAAATCTAGGACTAATATCAATATTTGGTTACATGCTTTTTCTTTTCTACATTGGTGTCAAAACTGATATGAGTGTTGTCCATAAAACAAAAAATGGTGTGACAAACATAGGTTCTTTTGCTATAATAGCTCCATATCTATGTAGTATGGCGGTTCTAAATTCCTACTCATCAAAATACCTACAACCTTTGGAAGTAAACATCCTTGGAGCTATCATTGGATTGTTCTGTATGGTATCATTTCCTGTGATTTCCTCAACTTTAAGTGATATAAAGATTCTCAATTCAGAATTGGGTCGAATCGGTCTATCAGCATCATTAGTTAGTGAGATTTTCAATGTGTTCTTAGCATCATTGATAACATTTTCTAAATTATACGGAGAGCGTGGTCCAAAGAATGCTTTGGTTTGTGTTGCAGCCGCTATCTTGTATATACTCATGGTTATATTCATTATTCGACCCGCGATGTTTTGGATAATAAAACAAACACCAGAAGTCATTGTTGTTGCCAAATTTATTGCTTGTATGATAATTCCTTTACGCTTTGGGATGCCATGGAATGATGCTATTTGTTTATCTTTAATTATGAGTTCCAAAGGTGTTGTGGAAATGGCTGCTTTCTCTTTGATCAGAGATTCCAAAGGTCTACCAGATAACATTTATTCATTATTGATGATGTGCATCATAGTAAACGGAACATTAATTCCAATGATGTTGCGTTATATGTACGATCCCACAAAGAAATACGCCGGTTACACAAAGAGAAACATAATAGATCTAAAAAGTAACTCAGAACTTCGAGTTTTAACATGTATTCATAGACCAGACAACATTCCAGCAACAATAAATCTTCTAGAAGCAACATATCCAACAAAAGAAGAACCAATTTGCAATTATGCACTTCAACTTGTTGAATTAATAGGAAGAGCTTCTCCAATTTTCATCTGTCATAATCTTCAAAGAAAGAAGAAATTAAATTCAAACACATCAATAGCAGATAAGTTACTAGAATCATTTCAAAGTCTTGAAAGAGAGTTCGAAAATTGTTTAGTTGTCAATGCATTCACAGCTATCTCGCCACTAGAAATGATGTACGACGATATATGTACATTAGCACTCGATAAGTATACATCGCTTATCATACTTCCTTTCCATCGAAAATGGTCTTGTGATGGTAACTCGATCGAGCTAGAAGATGAGTCATTAAGGGATATAAACTATAGAGTTATGGAAAGAGCACCATGGGGGAAAGATGATAGAGAAGCACTTTTTTTCACAAAGAGAATGTCTAAGAATCCACATGTTAAACTTACCGTGGTTCGATTCTTGTCATTCGATGCTGTTGATGAAGATTCGAACGGAAATGGTTGGGAAGGTTTACTTGATAATGAACTATTGGATGAAATAAAGACAAATAATAAAATTGGTAATGTTAGTGTTAGATATGTTGAGGAAAAAGTGAAAGATGGACCAGAAACAGCATTGATTATAAGATCTTATGTAACTGAATTTGATTTGATTATTGTTGGGAGACAAGCTGGAGTTGAAACTCCTCAAACTTCTGGATTATTGCAATGGAGTGAGTATCCTGAACTTGGTGTTTTGGGTGATTTGTTGGTTTCTACTGATGCTGGTGGAAAAGCTTCGGTTTTTGTTATACAACAACAAAGAACAGCTATGGATGTTTAA 1995 0.3434 MSSKYNDTFTQIKTCIYLPPRVNSQKPWFQMTDTRSFLQNSLPVLQIQICLIFFGTLFFKYILCRFGIPKFTSMSIVGLIFAATFNNNWTGKLKMIFSFDSQENLGLISIFGYMLFLFYIGVKTDMSVVHKTKNGVTNIGSFAIIAPYLCSMAVLNSYSSKYLQPLEVNILGAIIGLFCMVSFPVISSTLSDIKILNSELGRIGLSASLVSEIFNVFLASLITFSKLYGERGPKNALVCVAAAILYILMVIFIIRPAMFWIIKQTPEVIVVAKFIACMIIPLRFGMPWNDAICLSLIMSSKGVVEMAAFSLIRDSKGLPDNIYSLLMMCIIVNGTLIPMMLRYMYDPTKKYAGYTKRNIIDLKSNSELRVLTCIHRPDNIPATINLLEATYPTKEEPICNYALQLVELIGRASPIFICHNLQRKKKLNSNTSIADKLLESFQSLEREFENCLVVNAFTAISPLEMMYDDICTLALDKYTSLIILPFHRKWSCDGNSIELEDESLRDINYRVMERAPWGKDDREALFFTKRMSKNPHVKLTVVRFLSFDAVDEDSNGNGWEGLLDNELLDEIKTNNKIGNVSVRYVEEKVKDGPETALIIRSYVTEFDLIIVGRQAGVETPQTSGLLQWSEYPELGVLGDLLVSTDAGGKASVFVIQQQRTAMDV 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01183 664 PANTHER CATION/H + ANTIPORTER 270 516 - -
Trre12g01183 664 Gene3D - 269 352 IPR038770 -
Trre12g01183 664 Gene3D - 44 268 IPR038770 -
Trre12g01183 664 Pfam Sodium/hydrogen exchanger family 268 341 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre12g01183 664 Pfam Sodium/hydrogen exchanger family 49 263 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01183 Trre-Chr12 11729934 11733182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01183 271 659 Antiporter Super Family AT5G22900 39.443 1.85e-101 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01183 K26731 - gmx:100785558 560.451