Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01181 ATGCCCACCCTCTCCACCACCACTAATAATGCCATCACTAACACTAATACTAGTGTTCATTACTCAAATCAAAGTTCTAGTTTTGATTTTCGAACACTAATTGAACAACAGCTGGTGCAACCAAATGAGTTAACCAAGCTAAACAAATTTCAACTCGACTTCAATTCCAACACCATTACTCCAATACCCACAACCACTGTCAGCACATTCAACATCATTACTCCAACCACTACCACCCCAATTACCCCCATTTACACTACCACCACCTTCACTACCCCCACCCCCACTTCAACTATTTGCACCCCTGCAATCACCACTGGTACCCCCACTATGAATAACACTAAAATTAGTGTTCAAGGGACCAACCATTATCCTACCATTTCCCCTTTTCCAATACCCATGGAACAACAAATTCAACCAAACAACAATAATCAAGAGTTCATTCCCAAACATGTTACCTGCATTAAATTTACAACTGCTCATTTTGATCGTGCATACAATCATCCACCAGTTCCACAACAACTCCCAGTTGAGAGCAATCAACTATCTATAGTACCCCAAATTAATTCTCAGGTTTTATCAAATACACATATGCAAGAACCAAAACATAAATCAAGAAAAAGGAAAAATAATGATCATATGAGATTTGAGAGCCATGTGATTGTAGAGAAGCCTAAAGAAGATTCATGGACATGGAGAAAATACGGAGAAAGACCCATTAGTGGATCTCCACATCCAAGGAGCTACTACAAATGTAGTGGTTTTAGTAATTGTCCGGCAAAAAAACTGATACAAAAAAGTAAAACCATAGAAAACAATTATGTTGTGACATATAATGGAGAGCACAACCATGAAAAACCAACAGATATGGCGATGCTGCAACTTGATCAGCCGGAGAGCAGCAATGCTCGGGTTCTCATTGGTCAATCAAAAATCCCTTATCTAGAAAATGAACTTATAGAGAGTCATTTACATGCTGGTGGAGAAGCTGGATTATTCTCAAATGTTAGAAACATGGGCTCACCTAATGTGATGACATTACAGTTTAATGAGTTGAAGAGCAATAATGATCATATTTTTGCAGGTGAATTATCAGATGCAAACTTTATTGGAAGCTTATATGACGATTATGATATTTTGATAGAAAAAATGAAAACCATGTTAGAGGATTTCTTATTGGACTTCAACCACCTCATAGCGTTGTTCCCTTAG 1212 0.3787 MPTLSTTTNNAITNTNTSVHYSNQSSSFDFRTLIEQQLVQPNELTKLNKFQLDFNSNTITPIPTTTVSTFNIITPTTTTPITPIYTTTTFTTPTPTSTICTPAITTGTPTMNNTKISVQGTNHYPTISPFPIPMEQQIQPNNNNQEFIPKHVTCIKFTTAHFDRAYNHPPVPQQLPVESNQLSIVPQINSQVLSNTHMQEPKHKSRKRKNNDHMRFESHVIVEKPKEDSWTWRKYGERPISGSPHPRSYYKCSGFSNCPAKKLIQKSKTIENNYVVTYNGEHNHEKPTDMAMLQLDQPESSNARVLIGQSKIPYLENELIESHLHAGGEAGLFSNVRNMGSPNVMTLQFNELKSNNDHIFAGELSDANFIGSLYDDYDILIEKMKTMLEDFLLDFNHLIALFP 403
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01181 403 Gene3D WRKY domain 210 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g01181 403 ProSiteProfiles WRKY domain profile. 227 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g01181 403 Pfam WRKY DNA -binding domain 227 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g01181 403 SUPERFAMILY WRKY DNA-binding domain 224 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g01181 403 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 114 300 IPR044810 GO:0003700
Trre12g01181 403 SMART WRKY_cls 226 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre12g01181 Trre-Chr12 11715589 11718135 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01181 204 288 WRKY Transcription Factor Family AT5G52830 49.412 5.77e-22 94.4
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre12g01181 WRKY 2.1e-21 CL0274
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01181 - K13425 tpra:123905881 354.369