Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01160 ATGTCAAGGGCTCTTGATACCATTAAGTCTGTCAATGATTCGAAGGAACTATGGAAACTTGGTGTTAGGCTTGAAGACATCTGGATTGTCACTAACCAAGGAAAAGAACATTTGGAATTTATTATTTTGGACAAACAGGGTGACCAGATCCAGGTTCTCTTGCCATCTGAAGTTACCGCTTTGTGGAAATCTACATTAGTTGAAGGAGAAACTTATGTCATGAAAAACTTCAAAGTTCATGACAACAACTTTGCTGTTAAGTATTGTGTTCACCCTTTTAAGTTACTATTTGTTGGAGGTGATGGAGGATCCAACATCACACAAATGGATATACCTGATATCCCTCTCTACAAGTTTCACTTTAAGCCATTTCCTGAGATTTTGAATGGACAATTTCGCAGTGATATTTTAGTTGACATTATTGGAGCTGTTTACGATATCAAACCACCTAAGACAAGTAATGTTGGAAAAAAACAACCTGCGAGGTTCTGTTTAAAAGATGCAGCTATGAATATGGTGCCATGCACTTTGTGGGGTAATTTTGCATCCGACTTCATGACTTTTTACAATGCAAAGTCTGATGATAGCCCAATGATTATTATAATTAAACATGCTCAAATTAAAGAACCCCAAGGTCAATATGACTTAACTGTCTCTAATGCTTGGTCTGGAAGTAAGCTCATTTTGGATCCTAATCAAAACGAAATCATGGATTTTGCTGCAAGCTTGCCAAACCAGTTCACAGCTCCAACCCTTGCTGTTTCACAAACATTGTCTGGGAATGTCAATTCCTCACAAAACTCTCAAGTCTCTCAGTATTCGATTGCCTCTCGATACACCTATCTTGCACCACCTAAACAACTTTCTGAACTCATGGCATGTGGTGAGGATCAAGTTGTCACTACTGTTGGAACCACACACCATGTTATGACTTCCAAACATGGTTGGTTCTACTTAGTATGTGGCCACTGTAACAAACAAGTCATCACTACCTCTCCTCCATATAAATGCCAGGCTGAACATGTCACCATTGATCCACTAATCAAATACAAGGTTGAGGTAGAAGTCCGTTACCAAGACCAGAAGGCAAGGTTCCTTTTCTGGGACCGTGAATGCCAACAACTGATTGGAAAAACTGCTTTGGCGTTGAAAAACATTATGCTCAAGGAAGGACAATTTAATCCCCATGAGTATCCTCAGGCCCTTGATGACATTACAGGAAAGGAACTTGCACTTAAAGTTAAAGCACAACCATACTTTTCAATTGTTTCTGTTCTCAACTTGAAAACTGATCCTGATATCATACAGTATATTAAAGACCAACTCCCAACTAATGAGATTACATCCCAATTAGTTGTTGAAGATGAAACTTCTGATGAGCCTTCTAATGAGCCAATGGAGGATTGTCCAATTGATACGCCCACTGAATCACTAATACCAATTCCTACACTAGATCTTTCTGCTACGGGAGAGTCATTTGATGCTGATGTTAAGAAAATACTCCTGCAAAAAGGGTTACCAACGATTCCTCCCCTGAAGATGCAAAACTTTCTTCCAACAAAATTCTGA 1569 0.3913 MSRALDTIKSVNDSKELWKLGVRLEDIWIVTNQGKEHLEFIILDKQGDQIQVLLPSEVTALWKSTLVEGETYVMKNFKVHDNNFAVKYCVHPFKLLFVGGDGGSNITQMDIPDIPLYKFHFKPFPEILNGQFRSDILVDIIGAVYDIKPPKTSNVGKKQPARFCLKDAAMNMVPCTLWGNFASDFMTFYNAKSDDSPMIIIIKHAQIKEPQGQYDLTVSNAWSGSKLILDPNQNEIMDFAASLPNQFTAPTLAVSQTLSGNVNSSQNSQVSQYSIASRYTYLAPPKQLSELMACGEDQVVTTVGTTHHVMTSKHGWFYLVCGHCNKQVITTSPPYKCQAEHVTIDPLIKYKVEVEVRYQDQKARFLFWDRECQQLIGKTALALKNIMLKEGQFNPHEYPQALDDITGKELALKVKAQPYFSIVSVLNLKTDPDIIQYIKDQLPTNEITSQLVVEDETSDEPSNEPMEDCPIDTPTESLIPIPTLDLSATGESFDADVKKILLQKGLPTIPPLKMQNFLPTKF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01160 522 SUPERFAMILY Nucleic acid-binding proteins 119 247 IPR012340 -
Trre12g01160 522 CDD RPA1_DBD_A_like 19 100 - -
Trre12g01160 522 Gene3D - 266 439 IPR012340 -
Trre12g01160 522 SUPERFAMILY Nucleic acid-binding proteins 295 427 IPR012340 -
Trre12g01160 522 Gene3D - 3 101 IPR012340 -
Trre12g01160 522 Gene3D - 112 249 IPR012340 -
Trre12g01160 522 CDD RPA1_DBD_B_like 139 244 - -
Trre12g01160 522 SUPERFAMILY Nucleic acid-binding proteins 7 98 IPR012340 -
Trre12g01160 522 Pfam Domain of unknown function DUF223 40 137 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01160 Trre-Chr12 11574654 11577153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01160 1 406 Core DNA Replication Machinery Family AT5G08020 21.986 1.79e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01160 - - tpra:123884216 334.339