Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01151 ATGGTATCCAAAAACCCGAACCCGCCCGAAGGTTTCTGCTTGGATCCGACTCCCTTGGCTCTACCCGGTTTCGGCCCTTTCGCCTCCGTCTCCGCCGCCGCCAACTCTTCCGACGACGCCTCCAAGAAAATTCGCAAACCATATACTATAACCAAGTCTAGAGAGAATTGGACTGAACCTGAACATGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATCGAAGCATTTATTGGATCAAAGACCGTTATACAGATACGTAGCCATGCACAAAAATACTTTCTAAAGGTTCAAAAGAGTGGAGCAAATGAACATCTTCCCCCACCCAGGCCTAAAAGAAAAGCTGCTCATCCATATCCTCAAAAAGCTTCTAAAAGTGCTCCTGTGCTCCCACAAGTACCAGGATCTTTTCAGTCTTCAACACCTTTGCTTGAACCTGGATTTACACTGAATAATGAATCCATGCCAATGCTTGAAACTCCTATTATGAACACTGTGGTGTCTTCTTGGTCAAACCACCCGTTGCAAACTACAAATTTATTGCAAGTGCCAAAAGTAAATAATTCCTGCAGTAGCAGTGAAAGTACTCCTAAAGTGCGGCCGGTTGGTGAATCTAATAGTCAAACGAATAAAATCCTTCCATTGAGAGTTCTTCCAGATTTTTCTCAAGTATACAACTTCATTGGCAGTGTATTTGACCCAGAAGCAACTGAGCATCTACAAAAACTAAAAGAAATGGACCGTATAGATGTTGAGACGGTGCTTTTGTTGATGAGAAATCTGTCTATCAACTTAACTAGCCCAGATTTTGAGGACCATAAAAAGCTGCTTTCATCCTATGAAGTTGATCTAGAGACAAATAACTATCTCAATCCAGATAGACTGATACACGACGAACAGTTGAAGAGTGCTACTTAA 933 0.4223 MVSKNPNPPEGFCLDPTPLALPGFGPFASVSAAANSSDDASKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKSAPVLPQVPGSFQSSTPLLEPGFTLNNESMPMLETPIMNTVVSSWSNHPLQTTNLLQVPKVNNSCSSSESTPKVRPVGESNSQTNKILPLRVLPDFSQVYNFIGSVFDPEATEHLQKLKEMDRIDVETVLLLMRNLSINLTSPDFEDHKKLLSSYEVDLETNNYLNPDRLIHDEQLKSAT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01151 310 FunFam protein REVEILLE 6 isoform X1 56 104 - -
Trre12g01151 310 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Trre12g01151 310 PANTHER SWI/SNF COMPLEX-RELATED 37 273 - -
Trre12g01151 310 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Trre12g01151 310 CDD SANT 56 99 IPR001005 -
Trre12g01151 310 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Trre12g01151 310 MobiDBLite consensus disorder prediction 104 139 - -
Trre12g01151 310 MobiDBLite consensus disorder prediction 192 211 - -
Trre12g01151 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Trre12g01151 310 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Trre12g01151 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Trre12g01151 310 Gene3D - 56 104 - -
Trre12g01151 310 SMART sant 53 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01151 Trre-Chr12 11410096 11422583 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre12g01151 Myb_DNA-binding 7.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01151 - - gmx:100783949 461.455