Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01127 ATGGATACTCAAAATCTGATTCTACATTTCATTCTTCTCATTTTCATCCCTTTTTCATTCTCTTCTTTCATTCCTATAGATAACTATCTTCTCAACTGTGGATCAAATACCAATTCTACCCTTTTCAATAGGCTTTTCATAGGTGATGATTCCACCAACAAAGATTCAATTTTTCTCTTAGCAGACAAATCAATTTCCTTAACCAACCAAAACCCATCTCCAAATTTGCCTAATTTGTATCAATCTGCAAGAATTTTCACCAAAATGGGAAGCTACAGGTTCACCTTGAAGCAAAATGGTACCTTCTTTGTTCGTTTTCATTTCTTTTCTTTTAAGGCTCAAAGTTTTGATCTAAAAGATGCAAACTTTAGTGTCATAGTTGGTGGAAAATTGGTTATGAATAATTTCAATGTCAATTTCAAGCATAGTAGTAATGATAGTAATGATGCAATTATTAAAGAGTTTATTTTGAAAGTGGAGTCAAATTTGCTTGAAATTGTGTTTAGACCTGATTCTGGTTTTGGTTTTGTTAATGGTATTGAAGTGTTTTCTGCTCCTGAAGATTTTGTTGTAGATTATGGTTCAAGGTTTGTTGGTCCTTTTGGTGTTAAGGAATACAAGAACCTTTCTTACAATGTTTTAGAAACTATTCATAGGATTAATGTTGGAGGTATGAAATTAACTCCTTTTAATGATACCCTTTGGAGGACATGGATTCCTGATAAGGATTTTCTGGTTTTTAAGGAAGCTGCTAAGACTGTAGTGAGTACTCATACACCAGATTATCAGAAAGGAGGCGCGACTCGAGAGATCGCACCTGATAGTGTTTATATGACAGCTCAGGAGATGAATAGGGATAATCAATCTATTTTAGCTTCACAATTTAACATAACATGGAACTTTTCGGTAGCTTCTGGTGGTGTTAGTGTTCGACATTTGGTTCGGTTGCATTTCTGCGATATTGTTAGTCCTGCTCTTAATTTGCTTTACTTTGATGTGTATATCAATGGATATTCTGCATATAAGGATGTTGATTTGTCGTCTCTTACTTTCCATATGCTTGGATCTCCGGTGTATGTGGATTTCGTTGTTGATTCTGATGATTCGGGTGTTATTCAAATAAGTGTTGGCCCTTCTGATCTTAGTAGTTCAATGAGGAAGAATGCGATACTTAATGGCGCAGAGATAATGAAGGTTGTGAATGTTATTGATTCACATTCATTTGTTGCTCATAGGAAAAAAAGATTGGTGTTCGTGTTGGTTGGTTCGATTTTTGGAGGAATTGTTATTTTACTTTTAGTTGTAGCTGTTTTTGTAGTTTGTTGGAGATGCAGAAAGAAGAAACCGAAACTACGGTCGGTTGAAAGTGTAGGATGGACGCCGTTACGTGTGTTTGGAGGAAGTTCACTTAGTAGAATGTCTTATCCGTCTCCCGGTTCTTACGGACATTTCAGTTTGAAAATTGCTTTTGCTGATATACAATTAGCAACTAACAATTTTGATGAAAGTCTAATTATAGGATCAGGTGGATTTGGTATGGTTTACAAAGGAGTTCTAAGAGACGGTGTGAAGGTTGCTGTCAAAAGAGGCATGCCGGGATCAAGACAAGGCCTTCCGGAATTCCAAAGCGAAATAACAATTTTATCCAAAATTCGACATCGCCATCTTGTTTCGCTAGTTGGATTTTGCGAAGAAAATTCAGAAATGATACTTGTGTATGAGTATGTCGAAAAAGGTCCACTCAAAGATCATCTATATGGTTCAGAAGGACTTCAACCTTTGTCTTGGAAGCAGCGTCTCGAGATATGCATCGGTGCAGCTAGAGGTCTACACTATCTTCACACTGGTTTTGCTCAAGGAATCATCCACCGCGACATTAAATCGACCAACATTTTGCTCGATGAAAATTATGTTGCTAAGGTTGCTGATTTCGGTCTTTCAAGATCCGGACCTTGTGTCAACGAAACTCACGTGAGTACTAATGTGAAAGGTAGTTTCGGTTATCTTGATCCGGAGTATTTTCGAAGGCAACAACTTACGGATAAATCAGATGTTTATTCGTTCGGCGTTGTTCTTTTCGAGGTTCTTTGTGTTAGGCCAGCCGTTGATCCACAACTTGATAGGGAACAAGTAAATCTCGCAGAATGGGCTCTTCAATGGCAAAGGAAGGGTACGTTGGAGCATATTATCGATCCTTATCTTGTCGGTAAGATCAAAGTAAGCTCATTGAAGAAATTTGGTGAAACCGCAGAAAAATGTTTGGCGGAAGACAGCATTGATAGGCCGTCTATGGGTGATGTGTTATGGAATTTGGAATATTCACTTCAGCTTCAAGAAAGTGGTGATCAAGAAGTGAATGTCACATATGATGATAGCATTGATAATGCAGAATTGAATGTTACATCTTCCATAATTCCTAGTAATCCTCCTAACAGCATGAGATTAGAGGGAGATTATGATAACAATTACTCTAATGTAAGTGGCACCAAATTTTTTTCACAACTAATGACTAGTGATGGTAGATAG 2526 0.3729 MDTQNLILHFILLIFIPFSFSSFIPIDNYLLNCGSNTNSTLFNRLFIGDDSTNKDSIFLLADKSISLTNQNPSPNLPNLYQSARIFTKMGSYRFTLKQNGTFFVRFHFFSFKAQSFDLKDANFSVIVGGKLVMNNFNVNFKHSSNDSNDAIIKEFILKVESNLLEIVFRPDSGFGFVNGIEVFSAPEDFVVDYGSRFVGPFGVKEYKNLSYNVLETIHRINVGGMKLTPFNDTLWRTWIPDKDFLVFKEAAKTVVSTHTPDYQKGGATREIAPDSVYMTAQEMNRDNQSILASQFNITWNFSVASGGVSVRHLVRLHFCDIVSPALNLLYFDVYINGYSAYKDVDLSSLTFHMLGSPVYVDFVVDSDDSGVIQISVGPSDLSSSMRKNAILNGAEIMKVVNVIDSHSFVAHRKKRLVFVLVGSIFGGIVILLLVVAVFVVCWRCRKKKPKLRSVESVGWTPLRVFGGSSLSRMSYPSPGSYGHFSLKIAFADIQLATNNFDESLIIGSGGFGMVYKGVLRDGVKVAVKRGMPGSRQGLPEFQSEITILSKIRHRHLVSLVGFCEENSEMILVYEYVEKGPLKDHLYGSEGLQPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCVNETHVSTNVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCVRPAVDPQLDREQVNLAEWALQWQRKGTLEHIIDPYLVGKIKVSSLKKFGETAEKCLAEDSIDRPSMGDVLWNLEYSLQLQESGDQEVNVTYDDSIDNAELNVTSSIIPSNPPNSMRLEGDYDNNYSNVSGTKFFSQLMTSDGR 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01127 841 ProSiteProfiles Protein kinase domain profile. 500 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01127 841 FunFam Receptor-like protein kinase FERONIA 213 401 - -
Trre12g01127 841 FunFam Receptor-like protein kinase FERONIA 576 788 - -
Trre12g01127 841 PANTHER OS07G0166700 PROTEIN 487 778 IPR045272 GO:0004714|GO:0006468
Trre12g01127 841 Gene3D Transferase(Phosphotransferase) domain 1 576 797 - -
Trre12g01127 841 Gene3D - 213 400 - -
Trre12g01127 841 Gene3D - 28 187 - -
Trre12g01127 841 SUPERFAMILY Protein kinase-like (PK-like) 474 772 IPR011009 -
Trre12g01127 841 Pfam Malectin-like domain 31 399 IPR024788 -
Trre12g01127 841 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Trre12g01127 841 SMART serkin_6 500 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01127 841 Pfam Protein tyrosine and serine/threonine kinase 506 765 IPR001245 GO:0004672|GO:0006468
Trre12g01127 841 CDD STKc_IRAK 506 772 - -
Trre12g01127 841 FunFam receptor-like protein kinase FERONIA 469 575 - -
Trre12g01127 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Trre12g01127 841 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Trre12g01127 841 FunFam Putative receptor-like protein kinase 28 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01127 Trre-Chr12 11119456 11121981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01127 23 841 Receptor kinase-like Gene Family AT3G46290 48.383 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre12g01127 Malectin_like 9.6e-30 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01127 - - psat:127128324 1363.59