Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01126 ATGCTGGTGATACGCATTGGATGCTTTAGAGTTTTGGTTGAAGTTTCAGTAGCTGTGTTTGCTTTCATGGATCATAATGGTTCTATTGATGATAAGTGTGACAATAGACTCTACATCGGCAATCTTGATCTTAGAATTACAGAAGCTGCTCTACTCAAAATGTTTAATCCATATGGAAAGATCGTGTCCGAGGACTTCCTCTGGCACACTCGTGGCCCAAAACGTGGGGAACCTCGAGGATTCGCTTTTATACAGTATAACACAAAAGAGGAAGCAATATTGGCCAAGGAGAAAATGCACGGGAAGCTAGCTTGCGGCCGGCCGTTGGTTGTACGCCTTGCAAGTGAGAGATACGCACTGGAAACACCCGCTAGCTCTACAAAAGCAGTTGGTGAAGGGCACAAGTTGCATCTCACTGGCGGTGGCACAGGACAGACAAGTCGTAGTGCGAAAATAGCTGCTATAAAGAACAAGTTGAAGTCTTTCAAGGAAGATAACTCTAGGAGCAAGAAACAGAAGCAGAGTGACAATGTATCTTGA 540 0.4463 MLVIRIGCFRVLVEVSVAVFAFMDHNGSIDDKCDNRLYIGNLDLRITEAALLKMFNPYGKIVSEDFLWHTRGPKRGEPRGFAFIQYNTKEEAILAKEKMHGKLACGRPLVVRLASERYALETPASSTKAVGEGHKLHLTGGGTGQTSRSAKIAAIKNKLKSFKEDNSRSKKQKQSDNVS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01126 179 CDD RRM_RBM18 36 115 IPR039157 -
Trre12g01126 179 MobiDBLite consensus disorder prediction 125 179 - -
Trre12g01126 179 Gene3D - 32 129 IPR012677 -
Trre12g01126 179 Coils Coil 152 172 - -
Trre12g01126 179 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 73 161 - -
Trre12g01126 179 MobiDBLite consensus disorder prediction 157 172 - -
Trre12g01126 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 109 IPR000504 GO:0003723
Trre12g01126 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 116 IPR000504 GO:0003723
Trre12g01126 179 SMART rrm1_1 36 112 IPR000504 GO:0003723
Trre12g01126 179 SUPERFAMILY RNA-binding domain, RBD 29 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01126 Trre-Chr12 11113163 11115187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01126 37 117 Eukaryotic Initiation Factors Gene Family AT3G16380 35.802 3.53e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01126 K24527 - gmx:100804800 243.432