Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01117 ATGTCATCGCCGGGATTCAATACCGGTGGTAATGGATCGTCGGAATATTTCTCCGGCAGATCAACAAACACCATCAACAACCTCACCACCACCAATAACCTCCACCATAATCTCTCTCTCTACCGAACCCACCAACAACAACAACCACTTCCTCCAATTTTTCTAGCTCCTTCTTCACAGATCCCTCAACAACGCTTCATCGGAAAACGCACCTTAGCTGAATTCCAAACCCAACAACACCAAACCTACAACATCAACAACAATCTCAACAACAACCTTAACAATAACCACGTTCTCTCAAATCTTTTACTTCGTTCTGTAAAACCAAGAACAACAACAAATTTTCAGTTTCAAAACAATTCTCCATCATCTTTTTCACTTCCTGAATTACAACAAAACCCTTTTAACAACTACCAAACGCACCGTTTAGGTGTTCCTTTACAAATTAACCCAAATTTTCATCATTATAGACCCACCTCGAATTTAACTCAAGTAATAAACCGGGTTCAAAATCAAACCGTTGAACCGGTAGAAGAAAAAAAGACCAACAACGATCACACGCTTCTTCAAGAATTAGAAAAACAGCTTCTAGATGATAACGACGATGACGGTGAAGCTTCTGTTATAACAACAAGTGAATGGTCAGAGACATATCAGAATCTAATTGGGCCGTGTAATGGGCCGAGTCAGGCCCAGAAACAGGTTTCTTCATCGCCAACTGCGTCTACCACGTCATCAACTTCTTCTTCAGCTGCTTCACCTGCTTCTGTTTGTTCCAAACAAACCCTAATTGAAGCTGCAAACGCTATTTCAGAAGGTAAAAACGACGTCGCATTAGAGATCTTAACACGTTTAGTTCAGAATTTGAATCCGAATTTGATGAATTTGAATTCGGATCAACGGTTAACTAATTGCATGATTTCGGCTCTGAAATCGAGGTTGAATCCGGTTGAAAATCCACCGGTTGTTGCGGAATTGTTTGGTAGAGAACATGCTGAGTCGACTCAGCTGTTGCTTGAAAACTCGGTTTGTTTCAAGGTTAGTTTCATGGCTGCGAATCTCGTGATCATGGAAGCAGCATTTGAAGAAAACGGTAACGGTAACGGTAACGGAAAAGGTTTCTGTGTGGTGGATTTTGAAATTGGACAGGGGAAACAATATGTTAATCTTCTTCACGCGCTAAAAGCGCGTGAGGTTTCGGTTTCACCTGCATCGTGTTTCACGTTGAAGATAGTTGCTGTGGCGGAGAACGGCGGCGACGAGAGAGTTAAAGCGGTCGGTGAAATGTTAAGTCGTCAAGCGGAGAGGTTAAGAATCGGTTTCGAGTTTCGTATTGCAACCGTTTCTCAGCGACAAGTGAACGAGTTAAGTCGCGAGTTATTAGGTTGTGACTCGGAAGAAACGCTTATTGTAAATTTCGCGTTTAAGCTGAATCGAATTCCAGATGAAAGCGTTTCAACGGAGAACCCACGCGACGAGCTTTTGAGGCGCGTGAAGAAACTTTCGCCGCGCGTGGTTACAATTGTGGAGCAAGAAATGAATTGTAATACGGCGCCGTTTTTGGCACGAGTTGCTGAGTCGTGGTCTTATTATTCTGCTTTGTATGACTCGGTTGAGTCTGTTTTAGGAAAAGATAACTCGGACCGAGTCAAGATTGAAGAAGGACTGAGTAGGAAATTAAGTAATTCGGTGGCTTGTGAAGGTAGAGATCGTGTTGAACGGTGTGAGGTTTTTGGAAAATGGCGCGCAAGGATGAGTATGGCGGGGTTTAAGTTGATACCAATGAGTCAAAACGTTGTTGAGTCAATAAAATCGCGACTCGCTGTGAGTAATAACAACCGAGTTAACACGGAACTCAGTGTGAAAGAAGAGAACGGTGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACCGTTGCTTCTGCTTGGCGTTAA 1935 0.43 MSSPGFNTGGNGSSEYFSGRSTNTINNLTTTNNLHHNLSLYRTHQQQQPLPPIFLAPSSQIPQQRFIGKRTLAEFQTQQHQTYNINNNLNNNLNNNHVLSNLLLRSVKPRTTTNFQFQNNSPSSFSLPELQQNPFNNYQTHRLGVPLQINPNFHHYRPTSNLTQVINRVQNQTVEPVEEKKTNNDHTLLQELEKQLLDDNDDDGEASVITTSEWSETYQNLIGPCNGPSQAQKQVSSSPTASTTSSTSSSAASPASVCSKQTLIEAANAISEGKNDVALEILTRLVQNLNPNLMNLNSDQRLTNCMISALKSRLNPVENPPVVAELFGREHAESTQLLLENSVCFKVSFMAANLVIMEAAFEENGNGNGNGKGFCVVDFEIGQGKQYVNLLHALKAREVSVSPASCFTLKIVAVAENGGDERVKAVGEMLSRQAERLRIGFEFRIATVSQRQVNELSRELLGCDSEETLIVNFAFKLNRIPDESVSTENPRDELLRRVKKLSPRVVTIVEQEMNCNTAPFLARVAESWSYYSALYDSVESVLGKDNSDRVKIEEGLSRKLSNSVACEGRDRVERCEVFGKWRARMSMAGFKLIPMSQNVVESIKSRLAVSNNNRVNTELSVKEENGGICFGWMGRTLTVASAWR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01117 644 ProSiteProfiles GRAS family profile. 250 644 IPR005202 -
Trre12g01117 644 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 232 632 IPR005202 -
Trre12g01117 644 MobiDBLite consensus disorder prediction 219 253 - -
Trre12g01117 644 Pfam GRAS domain family 260 644 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01117 Trre-Chr12 11048226 11050160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01117 66 644 GRAS Transcription Factor Family AT5G52510 48.052 4.49e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre12g01117 GRAS 4.4e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01117 - - gmx:100808172 628.632