Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01094 ATGTCAAGTGAAGTTGCCAAGAAAGAAGAATCTCTAAATCTGAAAATCACTAAGCAAAGCTATGTGAAACCTGAGGAAAAAATAGGAAAAAAAGAGTGTCAATTGGTCACATTTGATCTACCTTACTTAGCTTTTTATTACAACCAAAAAATAATTTTATACAAAGGTGGTAATTTTGAAGAAAATGTTGAGAAACTCAAAAATGGGCTTAGTGTTGTTTTGAAGGAGTTTCATCAACTAGCTGGAAAATTAGGAAAAGATGAAGAGGGTGTGTTTTTTGTTGAATATGATGATGACATGGTTGGTGTTGAAGTTATTGAAGCGGTTGCTAATGAAATTGGTGTTGAAGATCTAACTGATGCTGAAGGTAGTGCCATTTTGAAGGAGTTGATTCCTTATAGTGGAATCTTGAATTTGGAAGGCATGCATAGACCTTTATTGGCTGTTCAGTTAACAAAGATCAAAGATGGGCTAGCAATGGGCTTGGCTTTTAACCATGCTGTTGTTGATGGAACTTCCACATGGCACTTCATGACTTCATGGGCCGAAATATGCAGCAGTGCACCCCCCAAAACACCCCGGCCATTCTTGGAACGGACCAAGTCCCGAAACACACGCGTAAAGCTTGACCTCTCCCTGCCCGAGCCCAAAAGCCCAGCAGCCAACGGTGAGGCAAAGCTTGAGCCCGAAGGCCCTCCTCCATCAGCCAATGGTGAGTCAAAGCCTGAGCCTGAAGGCCCACCACCATCAGCCAATGGTGGGGCAAAGCCCGTACTTAGGGAAAAGATCTTCAAATTTTCTGAATCAACCATCGACAAAATTAAGTCATCAATCAACCAAACTCTTCCATTAGACGGTTCAAAGCCATTCTCAACATTCCAGTCTCTCTCTGCTCATATTTGGCGTCATGTGACCCTTGCACGTGACCTAAAACCCGAAGAATATACAGTGTTCACCGTCTTCGCAGATTGCCGAAAACGAGTGGACCCACCAATGCCAGAGGCTTACTTCGGTAACCTAATTCAAGCCATATTCACTGTCACCGCCGCCGGACTTTTGTTGGCCCACCCGCCACAATTCGGCGCTTCTTTAATCCAAAAGGCAATTGAATCTCATGATGCTAATGTTATTGATGGACGTAACAAAGAGTGGGAGAGTGCACCAAAGATTTTTCAATTCAAAGATGCTGGAGTGAATTGTGTGGCAGTTGGAAGTTCACCAAGGTTTAAGGTTTATGACATTGATTTTGGATGGGGAGCACCAGAGATTGTGAGGAGTGGAACTAATAACAAATTTGATGGAATGATTTATTTGTATCCAGGGAAGAGTGGTGGTAGGAGCATTGATGTTGAGCTAACATTGGAACCTGAGGCTTTGGGAAGGTTGGAGCAAGATAAGGAATTTCTTATGGAAGTATAA 1419 0.4278 MSSEVAKKEESLNLKITKQSYVKPEEKIGKKECQLVTFDLPYLAFYYNQKIILYKGGNFEENVEKLKNGLSVVLKEFHQLAGKLGKDEEGVFFVEYDDDMVGVEVIEAVANEIGVEDLTDAEGSAILKELIPYSGILNLEGMHRPLLAVQLTKIKDGLAMGLAFNHAVVDGTSTWHFMTSWAEICSSAPPKTPRPFLERTKSRNTRVKLDLSLPEPKSPAANGEAKLEPEGPPPSANGESKPEPEGPPPSANGGAKPVLREKIFKFSESTIDKIKSSINQTLPLDGSKPFSTFQSLSAHIWRHVTLARDLKPEEYTVFTVFADCRKRVDPPMPEAYFGNLIQAIFTVTAAGLLLAHPPQFGASLIQKAIESHDANVIDGRNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGAPEIVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLEPEALGRLEQDKEFLMEV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01094 472 MobiDBLite consensus disorder prediction 188 256 - -
Trre12g01094 472 FunFam Tryptamine hydroxycinnamoyl transferase 247 466 - -
Trre12g01094 472 MobiDBLite consensus disorder prediction 196 210 - -
Trre12g01094 472 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 16 469 - -
Trre12g01094 472 Gene3D - 11 211 IPR023213 -
Trre12g01094 472 Gene3D - 237 465 IPR023213 -
Trre12g01094 472 MobiDBLite consensus disorder prediction 235 251 - -
Trre12g01094 472 Pfam Transferase family 14 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01094 Trre-Chr12 10860067 10864843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01094 12 472 Monolignol Biosynthesis Gene Families AT5G48930 25.532 1.10e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01094 K19747 - gmx:100790669 716.457