Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01082 ATGGAGAATCCTTCAACCAATAACAATATTGGCATTACAAGACAGTCCCTTAATGTAGAGGCTAATACACAAGGGAACCCTAAGTCTATCCTTAAGATGATGGCGGTGGCCTCCATCGCTGCCGGCATCCAATTCGGGTGGGCCCTGCAGCTCTCCTTGTTAACACCATATATCCAGTTGTTGGGAGTCCCACACAAGTGGGCTTCCAACATTTGGCTATGCGGTCCAATTTCTGGCATGATTGTCCAGCCACTCGTTGGCTTCTACAGTGACCGAAGCACTTCACGTTTCGGTCGCCGTCGTCCCTTCATCTTCTTCGGTGCCATCGCAGTTGCAATTGCAATCTTTCTCATTGGCTACGCTGCCGATCTTGGTCACTCGATGGGTGATGACTTGATGAAGAAAACACGGCCCCGTGCGGTGGTAATATTTATCTTGGGCTTCTGGGTACTTGATGTCGCAAATAATATGCTCCAGGGACCTTGTCGTGCCTTTATTGGTGACCTCGCCGCAGGTGACCACCGTCGAATGAGAACCGGAAATGCGTTGTTCTCGTTCTTCATGGCTGTCGGTAATGTCCTTGGTTATGCTGCTGGCTCCTACAACAAACTCCACGAAAAGTTTCCTTTCACACAAACCAAAGCTTGTGATGAGTTTTGCGCAAACCTCAAAACATGTTTCTTCTTCTCAATATTCTTCCTTGTAGTGCTTTCTACCTTCGCTCTACTTTATGTAGAAGACATCCCAATTACATCGTCAAAATCACAATCAGAATCAGAACCACAGGTTTCTTCTTTCGGCGAGTTGCTAGGTGCATTCAATGGACTCCAAAAACCGATGTGGTTGCTGATGCTAGTGACAGCCATCAATTGGATTGCATGGTTCCCATTCTTCTTGTTCAGCACTGATTGGATGGGTCATGAAGTGTACGGTGGAAATCCAGGAGATAAGGCATACAGCAAAGGAGTGCAAGCGGGGGCATTGGGACTCATGATCAATGCTATTGTGCTTGGTTTCATGTCTTTGGCGGTGGAACCGTTGGGGCGATTTATTGGGGGTGCGAAGAGGTTGTGGGGGGCTGTAAATATCATTCTTGCTATTGCACTCGCAATGACAGTACTCATCACCAAGGCATCAGAACATGAACGTCACATCAGTAATGTCGTTGGAAAACCCTCTCACGGTGTTAAGGCTGCATCGTTCTCCTTCTTCGGCATCCTTGGAATCCCTCTTGCAATTAATTTCAGTATTCCATTTGCTTTAGCATCTATTTATTCTACCTCATCAGGGGCTGGACAAGGTTTATCTTTGGGAGTCCTCAATATTTCAATTGTGGTTCCACAGATGATAGTATCGGCATTAAGTGGACAATGGGATTCTTTGTTTGGTGGTGGCAACTTGCCAGCGTTTGTGGTCGCTGCCGTGGCGGCGGTCATCAGTGCTATATTGGCGATCGTCCTTCTACCTACTCCAAAGCCGGAAGATATGGCTAAGGCTTCCGTTGGAGGTGGTTTTCATTAA 1521 0.4714 MENPSTNNNIGITRQSLNVEANTQGNPKSILKMMAVASIAAGIQFGWALQLSLLTPYIQLLGVPHKWASNIWLCGPISGMIVQPLVGFYSDRSTSRFGRRRPFIFFGAIAVAIAIFLIGYAADLGHSMGDDLMKKTRPRAVVIFILGFWVLDVANNMLQGPCRAFIGDLAAGDHRRMRTGNALFSFFMAVGNVLGYAAGSYNKLHEKFPFTQTKACDEFCANLKTCFFFSIFFLVVLSTFALLYVEDIPITSSKSQSESEPQVSSFGELLGAFNGLQKPMWLLMLVTAINWIAWFPFFLFSTDWMGHEVYGGNPGDKAYSKGVQAGALGLMINAIVLGFMSLAVEPLGRFIGGAKRLWGAVNIILAIALAMTVLITKASEHERHISNVVGKPSHGVKAASFSFFGILGIPLAINFSIPFALASIYSTSSGAGQGLSLGVLNISIVVPQMIVSALSGQWDSLFGGGNLPAFVVAAVAAVISAILAIVLLPTPKPEDMAKASVGGGFH 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01082 506 SUPERFAMILY MFS general substrate transporter 34 494 IPR036259 -
Trre12g01082 506 CDD MFS_SLC45_SUC 33 485 - -
Trre12g01082 506 Gene3D MFS general substrate transporter like domains 28 495 IPR036259 -
Trre12g01082 506 Pfam MFS/sugar transport protein 37 295 - -
Trre12g01082 506 NCBIfam sucrose/proton symporter 30 493 IPR005989 GO:0005886|GO:0008515|GO:0015770
Trre12g01082 506 PANTHER SUGAR TRANSPORTER 28 487 - -
Trre12g01082 506 FunFam Sucrose transporter SUC2 31 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01082 Trre-Chr12 10722728 10726417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01082 5 506 Sucrose Transporter Gene Family AT1G71890 62.941 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01082 K15378 - gmx:100782007 689.493