Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01076 ATGTACCACAATTTCTACTTTCTATTTTTAACCTTTTTTCTCTTCACCGCCGTTATCTCCGCCGTCAACCCTGGTTCCACTCTCTCCGCCTCCACCAACCAATCATGGTCTTCTCCAAGCTCCACCTTCTCTTTACGCTTTATCCCCGTCGACCCACCAACTTCTCCATCATCCTTCCTCGCCGCCATAGTCTACTCCGGCGGGGAGCCTGTTGTTTGGACAGCCGGTAACTCCACCGCCGTTGACTCCGGAGGGTTGTTCCAGTTTCAGTCAACCGGCAACCTTCGTCTTGTTAACGGCTCCGGCGCTACTGTCTGGGAATCCAAGACTGGTAATCAAGGTGCCACGTCAGCAACAGTTGATGACAGTGGCAAATTGGGAATTTCAAATGGGAAGAAAGAGATTTGGTCAAGTTTTGATCATCTTACTGATACCCTTTTGCCTTCTCAGAATTTTAGTGTTGGTAAGGTTTTGAAATCTGGTGATTATTCTTTTAGTCTTTCAAAGAATGGAAATTTGAGTTTGTTTTGGAATTCAAGTATAAAATTTTGGACTCATGGTTTGAATTCTACTGTTAATGGTAGATTGAGTAATCCTGTTTTAAGTTTACAATCTATTGGGATTTTGCAACTTTCTGATGTGAATTTGAGTTCTTCTGTTGTTGTTGCTTATAGTAGTGATTATGCTGATGGTGGTAGTGGTGGGAGTGATGTTTTGAGGGTTTTGAAATTGGATAGTGATGGGAATTTGAGGATTTATAGTACTTCTAGAGGTAGTTCGAATCCGATTGTGAGATGGGCGGCCGTTCAGGACCAGTGTCAAGTTTATGCTTTTTGCGGAAACTATGGTATATGTAGTTATAATGATACGAATCCTATTTGCGGTTGTCCTTCGGAGAATTTTGAGATGATTAGTGGTAATAGGAAAGGATGTAAGAGGAAAGTGAATCTTGATAGTTGTCGAGGGAGTGAAACTATGTTGACTTTGGATCATACTCAGTTTTTGACTTTTTCTCCTGATATTGAGTCGCAGACGTTTTTCATTGGTATATCGGCGTGTAGAGGAAATTGTCTCTCGGGTTCGGCTGCTTGTTTTGCTTCGACTTCTTTGTCGGATGGAACTGGGCAATGTTACATTAAGTCGGTGGATTTTGTGAGTGGTTATCATAGTCCTGCGTTACCTAGTACTTCTTATGTCAAGGTTTGTCCACCACTGGCTCCGAATCCAACGCCTTCTTTGGGGGAGACGGTGAAGGAAAAGAGTTCGAGTGTACCTGCTTGGGTTGTTTTGGTTGTTGTTTTGGGTACCCTTTTAGTTGTGGTTGCTATTGAAGGTGGTTTATGGATTTGGTGTTGTAGAAAAACTGCAAGGTTTGGTGTATTGTCGGCTCAGTATGCACTTCTTGAGTATGCTTCCGGTGCGCCGGTTCAGTTCACATACAAGGAGCTCCAGCGCTCGACAAAAGGGTTCAAGGAGAAGCTCGGAGCCGGTGGATTTGGTGCTGTGTATAGAGGAATTCTTGTTAACAAAACTGTTGTTGCAGTGAAACAGCTTGAAGGAATTGAGCAAGGTGAGAAACAGTTTAGGATGGAAGTTGCAACTATAAGCAGTACTCATCATCTTAATTTGGTGCGGCTTATCGGCTTTTGCTCGGAAGGACGCCACAGGCTTTTAGTCTACGAGTTCATGAAAAATAGTTCCCTGGATAATGTTTTATTCCCAACAGAAGAGCAATCGGGAAAGCTGTTGAATTGGGAGTATCGGTACAATATTGCACTTGGCACTGCAAGAGGAATCGCGTATCTTCATGAGGAGTGTCGCGACTGCATAGTCCACTGCGATATCAAACCTGAAAACATTCTCTTGGACGATAATTATGTCGCCAAAGTCTCTGATTTCGGTCTTGCAAAGCTTGTTAATCCGAAGGACCACAGACACAGAACCTTGACAAGCGTAAGAGGAACAAGAGGATATTTAGCCCCCGAATGGATTGCAAATCTTCCCGTAACATCGAAATCCGATGTTTACAGCTACGGCATGGTTTTGCTAGAGATTGTGAGTGGAAAAAGGAACTTTGATGTCTCCGACGAAACAAATAGGAAGAAATTCTCTATTTGGGCCTATGAAGAGTTTGAGAAAGGTAACATCAAAGGAATTTTAGACAAAAGACTTGCAGATGTAGAAATTGATATGGAGCAAGTTACGAGAGCGGTTCAAGTATGCTTTTGGTGCATTCAAGAACAACCGTCGCAAAGACCAGCGATGAGCAAAGTTGTTCAAATGCTAGAAGGAGTAAAAGAAATCGAGAAGCCACCTCCTCCTAAATTAGTTGTCGAAGGACCTGTTAGTGGAACTAGCACCTACATTAGTAGCAATGTTAGTGCATTTTCCACAATTGGAGCCTCACCAAATGTTCCTTCTGCTTCATCTTCTTCATCAATCCTAACTAGTGGTGTTTCAAACTTTCCCTTGGGAAGAAACCCCGAGAAGGCAACTTCATCTCTTTTGCAAACAGATCAATGA 2523 0.4289 MYHNFYFLFLTFFLFTAVISAVNPGSTLSASTNQSWSSPSSTFSLRFIPVDPPTSPSSFLAAIVYSGGEPVVWTAGNSTAVDSGGLFQFQSTGNLRLVNGSGATVWESKTGNQGATSATVDDSGKLGISNGKKEIWSSFDHLTDTLLPSQNFSVGKVLKSGDYSFSLSKNGNLSLFWNSSIKFWTHGLNSTVNGRLSNPVLSLQSIGILQLSDVNLSSSVVVAYSSDYADGGSGGSDVLRVLKLDSDGNLRIYSTSRGSSNPIVRWAAVQDQCQVYAFCGNYGICSYNDTNPICGCPSENFEMISGNRKGCKRKVNLDSCRGSETMLTLDHTQFLTFSPDIESQTFFIGISACRGNCLSGSAACFASTSLSDGTGQCYIKSVDFVSGYHSPALPSTSYVKVCPPLAPNPTPSLGETVKEKSSSVPAWVVLVVVLGTLLVVVAIEGGLWIWCCRKTARFGVLSAQYALLEYASGAPVQFTYKELQRSTKGFKEKLGAGGFGAVYRGILVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNSSLDNVLFPTEEQSGKLLNWEYRYNIALGTARGIAYLHEECRDCIVHCDIKPENILLDDNYVAKVSDFGLAKLVNPKDHRHRTLTSVRGTRGYLAPEWIANLPVTSKSDVYSYGMVLLEIVSGKRNFDVSDETNRKKFSIWAYEEFEKGNIKGILDKRLADVEIDMEQVTRAVQVCFWCIQEQPSQRPAMSKVVQMLEGVKEIEKPPPPKLVVEGPVSGTSTYISSNVSAFSTIGASPNVPSASSSSSILTSGVSNFPLGRNPEKATSSLLQTDQ 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01076 840 FunFam S-receptor-like serine/threonine-protein kinase 461 562 - -
Trre12g01076 840 SMART blect_4 27 142 IPR001480 -
Trre12g01076 840 ProSiteProfiles Protein kinase domain profile. 488 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01076 840 Gene3D Transferase(Phosphotransferase) domain 1 563 771 - -
Trre12g01076 840 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524
Trre12g01076 840 ProSiteProfiles Bulb-type lectin domain profile. 143 265 IPR001480 -
Trre12g01076 840 Pfam D-mannose binding lectin 71 157 IPR001480 -
Trre12g01076 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 187 IPR036426 -
Trre12g01076 840 Gene3D - 17 141 IPR036426 -
Trre12g01076 840 ProSiteProfiles Bulb-type lectin domain profile. 19 141 IPR001480 -
Trre12g01076 840 PANTHER OS07G0415500 PROTEIN 7 774 - -
Trre12g01076 840 SMART serkin_6 488 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01076 840 Pfam S-locus glycoprotein domain 237 297 IPR000858 GO:0048544
Trre12g01076 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 563 772 - -
Trre12g01076 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Trre12g01076 840 MobiDBLite consensus disorder prediction 802 840 - -
Trre12g01076 840 PIRSF SRK 1 814 IPR024171 GO:0004674
Trre12g01076 840 Gene3D - 143 266 IPR036426 -
Trre12g01076 840 Pfam Protein kinase domain 491 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01076 840 SUPERFAMILY Protein kinase-like (PK-like) 471 763 IPR011009 -
Trre12g01076 840 CDD STKc_IRAK 494 764 - -
Trre12g01076 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 142 268 - -
Trre12g01076 840 Gene3D Phosphorylase Kinase; domain 1 459 562 - -
Trre12g01076 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01076 Trre-Chr12 10678821 10681343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01076 461 772 Receptor kinase-like Gene Family AT5G20050 44.000 4.70e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre12g01076 Pkinase 1.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01076 - - cam:101506838 1390.17