Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01068 ATGTTTCGTTTGTTCTTATTTGCTTTTCTCATTCCCTTTGTGGTATTGAAAGTTGATGAAGCTAATGCTGAACTTTACAGAAAAGTGGGAAATCAAATCTTACCTTATTCGACAATATATGTCGATCCATCCGGCCGCTACGGGAGCTTCACAACCATTCAATCTGCCATTGATTCGATACCTTCGAACAATGATCGTTGGATTGCCATTAGAGTGAAGGCCGGTACTTATAGAGAAAAAATAAATATTCCGGTGGATAAACCTTACATTATATTGAAAGGAGCAGGAAAGAGAAACACTATTGTTGAGTGGGATGATCATAGTTCAACCTTTGAAAGTCCTACCTTCACATCATTTGCAGATAATATTGTTGTCAAATCCATAAGTTTCAGAAATACATACAATGAAGCAAATAACAATGTACATGTAGCTGCTGTAGCTGCAATGATAAGTGGTGATAAGAGCTATTTTTTTAGAGTTGGTTTCTATGGTTATCAAGACACTTTGTGGGACGATAGAGGAAGACACTACTACAAGCTTTGTACCATACAAGGTGCAATTGATTTTATTTTTGGTGAAGGGCAATCTTTGTTTGAGAGGTGCTCCATATCTGTTATTGGTGGTGGATTTATAACAGCACAAGGTAGAGAGAATGCAAATGATCCAGGAGGGTTTGTTTTCAAAAATTGTCATGTGTTTGGAAATGCAACAACTTATTTGGGAAGGCCTTGGAGACGCTATGCTAGAGTCTTATTTTATAATTCCAACCTTGACAACATTGTAGCACCTAATGGTTGGAATCCATGGAACTATGATGGTCATGAGGATCTAACAACATTTGCAGAGTATGGTAATTTTGGACCTGGTTCTGATACATCTAATAGAGTGAGTTGGGCTAAGAAATTGGATGTAGCAACAGTTGAACATATGGCAAGTGTGAACTTCATCAACACACCAGAACAATGGATTGGTTATCAACCATTCTAA 987 0.3749 MFRLFLFAFLIPFVVLKVDEANAELYRKVGNQILPYSTIYVDPSGRYGSFTTIQSAIDSIPSNNDRWIAIRVKAGTYREKINIPVDKPYIILKGAGKRNTIVEWDDHSSTFESPTFTSFADNIVVKSISFRNTYNEANNNVHVAAVAAMISGDKSYFFRVGFYGYQDTLWDDRGRHYYKLCTIQGAIDFIFGEGQSLFERCSISVIGGGFITAQGRENANDPGGFVFKNCHVFGNATTYLGRPWRRYARVLFYNSNLDNIVAPNGWNPWNYDGHEDLTTFAEYGNFGPGSDTSNRVSWAKKLDVATVEHMASVNFINTPEQWIGYQPF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01068 328 Gene3D - 35 326 IPR012334 -
Trre12g01068 328 ProSitePatterns Pectinesterase signature 2. 183 192 IPR033131 -
Trre12g01068 328 SUPERFAMILY Pectin lyase-like 36 324 IPR011050 -
Trre12g01068 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 323 - -
Trre12g01068 328 ProSitePatterns Pectinesterase signature 1. 64 83 IPR018040 -
Trre12g01068 328 Pfam Pectinesterase 47 316 IPR000070 GO:0030599|GO:0042545
Trre12g01068 328 FunFam Pectinesterase 35 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01068 Trre-Chr12 10604038 10608913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01068 9 275 Carbohydrate Esterase AT2G19150 45.126 3.97e-74 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01068 - - mtr:11439145 524.242