LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g01042	ATGGCGGGTGCTACCGGAAGAACTCTCTTCACTCTCTCTTCTTCTCTCACTACACGCATTTCTCGTAATGGAAACCGTTTCTCATTCCTCACACTCTCAAATCCACTAACCCTTCTTCCACGATTCAGACCACTCTGTTCCTTAACCGCCACACCCGAACCCTTATTAGACACTGACACAGAAAAACACTCGATTCTTCTCGAGAAGCTCAGAGTGAGACACCTAAAAGGAACAGGAACTAGTAGTAGTAGTAAGAAAGTTCATGAAATTGTGAAGAAAAATGAGGTGAAGAAGAAGGTTGTTGTTGTTGATGAAGTTGTTGAGAGTTTTGATGAATTGGGAATTAGTGATGAGGTTATGGGTGCTGTTAAAGAAATTGGTATTGATGTTCCTACTGAGATTCAGTGTATTGGTATTCCTGCTATTTTGGATGGTAAAAGTGTTGTTTTAGGGTCTCATACTGGTTCTGGAAAAACTCTTGCTTATTTACTTCCACTTGTTCAGTTGTTAAGACGGGATGAGCAGTTAAACGGAATAGTGCTGAAGCCCAAGCGTCCCCGAGCTGTTGTGCTATGTCCTACAAGGGAGTTGTCTGAGCAGGTTTTCCGAGTTGCTAAATCGATAAGCCATCATGCACGATTCAGGTGCACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAGGAGGATTCACTTAGTAACCCTGTCGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAATTTGGTATATGGTGACATCCAATACGTGGTATTAGATGAGGCTGACACGATGTTTGATCGAGGCTTTGGTCCTGATATTCGCAAATTCCTGGCCCCATTAAAACACCGTGCTTCAAAACCTGATAGCCTTGGTTTCCAGACTGTTTTGGTCACTGCGACCATGACAAAGGCTGTGCAAGATCTGGTTGATGAGGAGTTTCAAGGCATTGTCCATCTGCGCACATCCACGTTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTCTTAAACTTTCTGGTACTGAGAACAAGCTGGATGCATTACTTCAGGTATTAGAGCCAAGTCTTGCAAAAGGTAACAGGGTAATGGTTTTCTGCAACACATTAAATTCTAGCCGTGCTGTGGATCACTTTCTTGGTGAAAATCAGATTTCTACCGTGAATTACCATGGGGAGGTACCGGCGGAACAAAGGGTTGAAAACCTCAACAAGTTTAAGAGTAACAGTGAAGATTGCCCTACATTGGTTTGCACGGATTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTATCATGTTTGACTTCCCTTTGAATTCTATCGATTACCTCCATCGCACAGGTAGAACTGCTCGTATGGGAGCAAAAGGGAAAGTAACAAGTTTGGTTACTAAAAAGGACTATAGCTTGGCAACCAAAATTGAGGAGGCAATAAGAAAGAATGAGAGTTTGGAGGCTATCACTAAAGAAAGTGTCCGAATGGACGTAACCAGGAACCAAATCACTGAGCAGAGAAGAAAGAACAAAAAAGGGTTTAAAACTTCCAAAGTTAGGGACAAATCTGATTCTCGTGCAAGTCCTGTGAATACCAGGTCAGGTATTAAGGACAGATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCAGGTAATAGGGATAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCAGGTAATAGAGACAAATCTGATTCTCGCACCCGCTATGAGAATACCAGGTCAGGTAGTAGGGACAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCAGGTAGTAGGGATAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGCCAGGTACGAAATCTGGTAAACAATCAGTGTCATCAAAGTTTACGAAGAATGGATTTCCCATTTCAAAACCTGTAAAATCTTCCAAGACAGGTAGCTTCAAAAAAGATTCTTCAGAGAATAAGCGAACGGATAAAAGGACCACTGCCACCAAATCTACAGATTCTAAACTTAATGTTGTTGGGTTTAGGGGGCGGAATGCATCATCCTCAGATAAGAGACAAACATATTAG	2103	0.4308	MAGATGRTLFTLSSSLTTRISRNGNRFSFLTLSNPLTLLPRFRPLCSLTATPEPLLDTDTEKHSILLEKLRVRHLKGTGTSSSSKKVHEIVKKNEVKKKVVVVDEVVESFDELGISDEVMGAVKEIGIDVPTEIQCIGIPAILDGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGIVLKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLSNPVDMVVGTPGRVLQHIEEGNLVYGDIQYVVLDEADTMFDRGFGPDIRKFLAPLKHRASKPDSLGFQTVLVTATMTKAVQDLVDEEFQGIVHLRTSTLHKKISSARHDFLKLSGTENKLDALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAEQRVENLNKFKSNSEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDYSLATKIEEAIRKNESLEAITKESVRMDVTRNQITEQRRKNKKGFKTSKVRDKSDSRASPVNTRSGIKDRSDSRTRSENTRSGNRDKSDSRTRSENTRSGNRDKSDSRTRYENTRSGSRDKSDSRTRSENTRSGSRDKSDSRTRSENTRPGTKSGKQSVSSKFTKNGFPISKPVKSSKTGSFKKDSSENKRTDKRTTATKSTDSKLNVVGFRGRNASSSDKRQTY	700

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g01042	700	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	76	499	-	-
	Trre12g01042	700	Pfam	DEAD/DEAH box helicase	132	315	IPR011545	GO:0003676\|GO:0005524
	Trre12g01042	700	MobiDBLite	consensus disorder prediction	625	652	-	-
	Trre12g01042	700	MobiDBLite	consensus disorder prediction	653	675	-	-
	Trre12g01042	700	Pfam	Helicase conserved C-terminal domain	351	462	IPR001650	-
	Trre12g01042	700	CDD	DEADc	119	318	-	-
	Trre12g01042	700	SMART	helicmild6	380	462	IPR001650	-
	Trre12g01042	700	CDD	SF2_C_DEAD	349	471	-	-
	Trre12g01042	700	MobiDBLite	consensus disorder prediction	542	624	-	-
	Trre12g01042	700	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	139	474	IPR027417	-
	Trre12g01042	700	Gene3D	-	73	327	IPR027417	-
	Trre12g01042	700	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	108	136	IPR014014	GO:0003724
	Trre12g01042	700	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	351	503	IPR001650	-
	Trre12g01042	700	MobiDBLite	consensus disorder prediction	676	700	-	-
	Trre12g01042	700	Gene3D	-	336	568	IPR027417	-
	Trre12g01042	700	MobiDBLite	consensus disorder prediction	506	700	-	-
	Trre12g01042	700	SMART	ultradead3	127	336	IPR014001	-
	Trre12g01042	700	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	139	326	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g01042	Trre-Chr12	10344113	10351763	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g01042	105	484	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.906	2.00e-41	154

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g01042	-		-	psat:127127975	1076.23