Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01041 ATGAAACGAAGAATCAGAGAGTTTCTAAGCCTCTGTTTTTCATCTCTACACTCTCAAAATCACCACAAACCACTCTCAAAATCACTACAACCCACATCATCTTTTCAAAACTCAACAACTTTCTCAACATTTTCCAACTCCCAAAGGGATTCACTGATTTTACAAAAGTTCAAAGAAAAGAAACTCAAAGGGTCATCAAAAGATTCAATTTTTAACCCAAATGCTTCAAATTTAGTTTCATCAAGTTTTGACACCAATGTTGAGAAAATGGCTCAAAAGGGTTTGAAAAATGAGAATGAAAATAATACTATGGTTGTTGGGAATTTTAAGGAGTTGGGTTTGAGTGAAGTGCTTGTTGAGGTTATGGAAGAGATTGGTGAATTTGTACCAAGTGAGATACAATGTGTTGTTATTCCAACTATTTTGGAAGGGAAGAGTTTGTTGTTAAGTTCACCTTCTCAGCATGATAGGACTTTGGCTTACTTGTTGCCCCTTATTCAGCTGCTAAGACGAGATAGAGAGTTGCTTGGTTCGAATTCAAAGCTTCCTCGAGCTGTCGTGCTTTGTGCTTCAGAGGAGAAGACTGAACAGTGCTTTAATGCTGCAAGATATATCATCAATAATGCAGAATTGAAGTCTGCAAAGAATTGTGTTTCATCAGATACCGAAAAGTCAAATTCTTCGATTGGCTTAATGATTGGAACTCCTTGTGAGATTCTTCATTACATTGAAGAGGGGATTGTTGTTCCTGCTGAATTAAATTACTTGGTATTGGATGAAGCGGATTCCATGCTCGGTACCAACCTTGGTCCTGAAATCCATAAAATTATCAGACCATTACAACACCGTGACTCAAAATCCAATGTCAAAAGATTACAAACTATTTTGGCAATTTCAACTATAGCTGAGGTTTTAGGTGAAAATTTGCCCCTTGTAAAATGTCTTGAGCGTGATCATGCTGGAAATATTTCTGCATTGTCGATAGAATTGGAGGAAACAGAAGTTTTTCATTTGACAGAGTCTCTGGATGCTCTTAGGAAAAAATTGGAGGAGGCAATGAATTCTCTTTAG 1071 0.3697 MKRRIREFLSLCFSSLHSQNHHKPLSKSLQPTSSFQNSTTFSTFSNSQRDSLILQKFKEKKLKGSSKDSIFNPNASNLVSSSFDTNVEKMAQKGLKNENENNTMVVGNFKELGLSEVLVEVMEEIGEFVPSEIQCVVIPTILEGKSLLLSSPSQHDRTLAYLLPLIQLLRRDRELLGSNSKLPRAVVLCASEEKTEQCFNAARYIINNAELKSAKNCVSSDTEKSNSSIGLMIGTPCEILHYIEEGIVVPAELNYLVLDEADSMLGTNLGPEIHKIIRPLQHRDSKSNVKRLQTILAISTIAEVLGENLPLVKCLERDHAGNISALSIELEETEVFHLTESLDALRKKLEEAMNSL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01041 356 Gene3D - 65 306 IPR027417 -
Trre12g01041 356 SUPERFAMILY PABC (PABP) domain 303 354 IPR036053 GO:0003723
Trre12g01041 356 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 319 IPR014001 -
Trre12g01041 356 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 36 301 - -
Trre12g01041 356 Coils Coil 342 356 - -
Trre12g01041 356 Pfam DEAD/DEAH box helicase 132 297 IPR011545 GO:0003676|GO:0005524
Trre12g01041 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 297 IPR027417 -
Trre12g01041 356 SMART ultradead3 126 331 IPR014001 -
Trre12g01041 356 Gene3D - 307 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01041 Trre-Chr12 10339018 10341859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01041 280 356 Eukaryotic Initiation Factors Gene Family AT1G49760 40.000 2.06e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01041 - - gmx:100800575 437.958