Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01034 ATGGCGGCAGTTTCATCACCTAAGACAATGATTCCAGCAGCTTTGAACGGCGGTACTGGAAGATTTGAGAATGCTTCTCTGTATGTTGGTGACCTCGAAAAGAATGTGAATGAGGCTCAACTGTATGATCTGTTTGGTCAGATTGGTCAAGTGGTTTCAATTAGGGTTTGTAGGGATCAGACCAAACTATCATCTCTTGGCTATGCTTATGTCAACTTTTCAAGTGCTAATGATGCTAATACTGCGATGGAACATTTGAATTTTACACCTTTGAATGGGAAGCCCATCCGTATTATGTTTTCTCATCGAGATCCTAGCATTCGGAAAAGTGGATTTGCAAATGTGTTCATTAAGAATCTGGACACATCAATAGACAACAAGGCTCTGCACGATACTTTTGCTTCCTTTGGGACTATACTTTCATGTAAGATAGCGCTTGATTGCAACGGTCAATCAAGGGGGTACGGGTTTGTCCAATTCGACAATGATGTGTCCGCACAAAATGCCATTGAAAAACTGGATGGAATGTTGATAAACGAAAAGAAGGTTTACGTAGGGCTTTTTATTCGACACCAAGAAAGGTCCAGACATGGATCCGCTAAGTTCACTAATGTATATGTCAAGAACTTTTCTGAAACATATACTGATGAGGACTTGAAAAAGCTATTCGACACTTTTGGTGTAATAACAAGTGCCGTTGTCATGAAAGATGACAATGGAAACTCCAAATGCTTTGGATTTGTGAATTTCCAAAGCTCGGATGCAGCAGCTGCTGCAGTTGAGCGGTTGAACGGGACCAGTACCAATGAGGACAAGATTTTATTTGTCGCGAGGGCACAACGAAAAACAGAAAGAGTGGCAGAGCTAAAAGCCAAATTCGAACAAGAAAAGATGAAGAGATATGAAAAATTACAAGGTGCAAATTTGTACGTGAAAAATCTTGAGGACAACATTAACGATGAAAATTTGAAGGGGCTGTTTTCGAATTTTGGAACAATAACATCTTGCAAGGTAATTTTTGATGCCGATGGCCGTAGCAAGGGCTACGGTTTTGTTGCATTTTCAACTCCGGAGGAAGCAAGTAAAGCGATGAATGAAATGAAAGGAAAGATAATTGAAAAGAAGCCTCTATATGTTTCTGTGGCTGAACGCAAAGAACAAAGGAAAGCTCGTTTGCAAGCTCGATTTTCTCAAATTCAAGCACTAGGAGGAATTGCACCTTTGCATGCAGGAGTTGTCGGATATCATCCGGCTGCGCCAAAAATTGCTCCTCAGCAATTGTATTTTGGTCAAGGCACACCTGGTTTCGTGCCATCTCAGCCAGCCGGATACGGTTTCCAGCAACAGTTCATGCCAAGTATGCAATCTAGTGTTGCTCCAAATTTCACCATGCCATACCACCATCAGAGGCAGGGTCATTTTGGGAATAGAATGAATGGGCGTCGAGTTGGTAACTTCCAACGGGGGCAACAAAACCGGATGCGTAATTTCAACCAAGGGTTTCGATATAATGGTCGGAATGGCAGGGATCTATCTGTAGATCCTGAAGATCTTATGGGTAAAATGATGGATCCATCTGTGGTTGCTGCAACTCCTATTGACAATCAACTTCATAGTGCATTGCCTAACACCACACTTTCTTCAACCTTGGCTTCTGCTACTCCAGAAATTCAACAGATGATGTTGAGTGAACATTTATTTCCGTTGGTAAGTCGTCTTACATCGAACGATCAAGCAGCGAAGGTGACAGGAATGTTGCTGGAAATGGACCAGGCAGAGGTTATCCATCTGATTGAGTCTCCTGAAGAATTGAAGATAAAGGTGTCTGAGGCCATGCAAGTCCTTCATGAAGCTTCGCCGAGTTCTGAATGA 1872 0.4225 MAAVSSPKTMIPAALNGGTGRFENASLYVGDLEKNVNEAQLYDLFGQIGQVVSIRVCRDQTKLSSLGYAYVNFSSANDANTAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFASFGTILSCKIALDCNGQSRGYGFVQFDNDVSAQNAIEKLDGMLINEKKVYVGLFIRHQERSRHGSAKFTNVYVKNFSETYTDEDLKKLFDTFGVITSAVVMKDDNGNSKCFGFVNFQSSDAAAAAVERLNGTSTNEDKILFVARAQRKTERVAELKAKFEQEKMKRYEKLQGANLYVKNLEDNINDENLKGLFSNFGTITSCKVIFDADGRSKGYGFVAFSTPEEASKAMNEMKGKIIEKKPLYVSVAERKEQRKARLQARFSQIQALGGIAPLHAGVVGYHPAAPKIAPQQLYFGQGTPGFVPSQPAGYGFQQQFMPSMQSSVAPNFTMPYHHQRQGHFGNRMNGRRVGNFQRGQQNRMRNFNQGFRYNGRNGRDLSVDPEDLMGKMMDPSVVAATPIDNQLHSALPNTTLSSTLASATPEIQQMMLSEHLFPLVSRLTSNDQAAKVTGMLLEMDQAEVIHLIESPEELKIKVSEAMQVLHEASPSSE 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01034 623 SUPERFAMILY RNA-binding domain, RBD 304 397 IPR035979 GO:0003676
Trre12g01034 623 SUPERFAMILY RNA-binding domain, RBD 201 286 IPR035979 GO:0003676
Trre12g01034 623 PANTHER RNA BINDING PROTEIN 24 87 - -
Trre12g01034 623 FunFam Polyadenylate-binding protein 18 110 - -
Trre12g01034 623 Gene3D - 194 286 IPR012677 -
Trre12g01034 623 Gene3D - 11 106 IPR012677 -
Trre12g01034 623 SMART rrm2_1 26 99 IPR003954 GO:0003676
Trre12g01034 623 SMART rrm2_1 308 380 IPR003954 GO:0003676
Trre12g01034 623 SMART rrm2_1 114 186 IPR003954 GO:0003676
Trre12g01034 623 SMART rrm2_1 204 276 IPR003954 GO:0003676
Trre12g01034 623 Gene3D - 287 393 IPR012677 -
Trre12g01034 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Trre12g01034 623 FunFam Poly(A) binding protein cytoplasmic 1 like 299 388 - -
Trre12g01034 623 SUPERFAMILY PABC (PABP) domain 459 618 IPR036053 GO:0003723
Trre12g01034 623 FunFam Polyadenylate-binding protein 111 194 - -
Trre12g01034 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Trre12g01034 623 SMART rrm1_1 308 380 IPR000504 GO:0003723
Trre12g01034 623 SMART rrm1_1 26 99 IPR000504 GO:0003723
Trre12g01034 623 SMART rrm1_1 204 277 IPR000504 GO:0003723
Trre12g01034 623 SMART rrm1_1 114 186 IPR000504 GO:0003723
Trre12g01034 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Trre12g01034 623 CDD RRM2_I_PABPs 111 186 IPR045305 -
Trre12g01034 623 Pfam Poly-adenylate binding protein, unique domain 550 615 IPR002004 GO:0003723
Trre12g01034 623 Coils Coil 276 299 - -
Trre12g01034 623 Gene3D - 539 619 - -
Trre12g01034 623 Gene3D - 107 193 IPR012677 -
Trre12g01034 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Trre12g01034 623 Coils Coil 382 402 - -
Trre12g01034 623 SUPERFAMILY RNA-binding domain, RBD 24 192 IPR035979 GO:0003676
Trre12g01034 623 CDD RRM3_I_PABPs 202 282 - -
Trre12g01034 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Trre12g01034 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Trre12g01034 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Trre12g01034 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 272 IPR000504 GO:0003723
Trre12g01034 623 SMART poly_2 554 618 IPR002004 GO:0003723
Trre12g01034 623 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 542 620 IPR002004 GO:0003723
Trre12g01034 623 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 25 615 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01034 Trre-Chr12 10268845 10272625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01034 24 615 Eukaryotic Initiation Factors Gene Family AT1G22760 54.010 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01034 K13126 - gmx:100783163 866.685