Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01018 ATGATCCGAAAATTGTTAGAGGAATACGAATCGGGTGGCGATATAAGAGAAGCTTGTAGATGCATGAAAGAATTAGGAATGCCATTTTTTCATCATGAAGTTGTTAAGAAAAGTTTGGTGAAAATTATTGAAAAGAAAAATGAGAGATTATGGGGTTTACTTAAAGAATGTTTTGATTCTGGATTAATAACTATGAATCAAATGGTTAAAGGTTTTGGAAGACTTGAAGAAACTCTTGATGATTTAGCTTTGGATGTTCCTGATGCTAAGAATCAGTTTGGATTTTATGTTGAAAAGGCAAAAAATGAAGGATGGTTGGATAGTTCATATTGTTACAACAATCACTACAAGAAATCTAGGGTTTGCTATGACACGATTTGTAGCTAA 387 0.323 MIRKLLEEYESGGDIREACRCMKELGMPFFHHEVVKKSLVKIIEKKNERLWGLLKECFDSGLITMNQMVKGFGRLEETLDDLALDVPDAKNQFGFYVEKAKNEGWLDSSYCYNNHYKKSRVCYDTICS 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01018 128 SUPERFAMILY ARM repeat 2 112 IPR016024 -
Trre12g01018 128 Gene3D - 1 113 - -
Trre12g01018 128 ProSiteProfiles MI domain profile. 1 116 IPR003891 -
Trre12g01018 128 PANTHER PROGRAMMED CELL DEATH 4 2 110 IPR039778 GO:0045892
Trre12g01018 128 SMART ma3_7 2 107 IPR003891 -
Trre12g01018 128 Pfam MA3 domain 2 107 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01018 Trre-Chr12 10187158 10187544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01018 3 107 Eukaryotic Initiation Factors Gene Family AT5G57870 33.333 3.12e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01018 - - gmx:102668745 201.83