Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01017 ATGGATTTCAATGATGGCTATGTATCAAAAGAGCACCGCGAGCTTCATCGATCTGCGTCCGAAAGTGTTGATCCTGTATCAGTTTCTCCTTTGCAACTTTCTCCTCCAAAGTCACCAAAGTCACCTAAATCTCCGAGGTCCCCAAAGGCGCAAGTCAAGGGCAGCAATTTAAGTCCAAAAAATAATAAGCAATCACATTCGTCGAAAGATGGACGTCCAAAGAAAGGTGGCTCTGGAGGTAAAGGAACATGGGGTGGATTGCTTGATACAGATGATGGAAACTCTCTTGACCCCAATGACCCAAACTATGACAGCACTGAGGAATATGATGAGTCAACCGAAAAGAAAACGAACACAGCATTGGAAGAGTACAAGAAAAAAGCTACTGTAATAGTCGAAGAATACTTCGCAACTGATGATGTTGTTGCAACAATGAGTGAACTTAGAGAAGTTGGAAAACCAGAATACAGTTACTATTTTGTCAAAAAGCTTGTCTCAATGTCGATGGATAGACATGACAAAGAAAAAGAAATGGCTGCAATTCTCTTATCTGCACTTTATGCTGACATAATTCATCCGTCACAAGTTTACAAAGGATTCACCAAACTAGTCGAATCGGCTGATGATTTGATAGTAGACATACCGGACACGGTCGATATTCTTGCGCTTTTTATAGCTAGAGCTGTCGTTGACGACATTCTTCCACCGGCATTTTTGAAGAAACAGATAGCAAACTTACCAAATGATTCTAAAGGTGCTGAGGTTTTAAAGAAAGCCGAGAAAAGCTATTTGACAGCACCTTTACATGCTGAAATCATCGAGCGGCGTTGGGGAGGTAGTAAGAATACAACGGTTGATGATGTGAAGGCGAGGATAAATAACTTCTTGAAAGAATATGTAGTAAGTGGTGACAAGAAAGAAGCTTTCAGATGCATTAAGGACTTAAAAGTTCCTTTCTTCCATCATGAAATAGTGAAAAGAGCTCTTATAATGGCGATGGAAAGGCGACAAGCGGAAACGCCATTACTAGACTTATTGAAAGAAGCAGCTGAAGAAGGTTTCATCAACACAAGCCAAATGTCAAAAGGGTTCAGCAGGTTGATTGAAACAGTCGACGATTTATCCCTCGACATACCGAATGCGCGCGGAATACTTCAACAACTAATGTCGAAAGCAGCATCCGAAGGTTGGTTATGTGTTTCATCGCTAAAATCACTTACAATTGAGCCTGAAAAGAACACAATACAAGAAAATGTTGCACGAAGTTTCAAGATGAAAACACAATCGATCATTCAAGAGTACTTTTTATCAGGTGATATATTCGAAGTGAATAGTTGTTTAGAACAAGAGAACAACAAAAACTGCGGTGAACTAAATGCAATTTTTGTTAAGAAGCTAATAACTTTAGCAATGGATAGAAAGAATAGAGAAAAAGAAATGGCTTCGGTGTTACTTTCATCGCTTTGTTTTCCACCAGATGATGTTGTGAGTGGTTTTGTTATGCTTATTGAATCGGCGCATGATACTGCATTAGACAATCCTGTTGTTGTTGAAGATCTTGCGATGTTTCTAGCAAGATCGGTAGTCGATGAAGTTTTAGCGCCGCAACAGCTTGAAGATATAGGAACACAATGTTTAAGCCAAGATTCAATTGGAAACAAAGTGCTTTTAATGGCTAAGTCATTGCTAAAAGCAAGATTAGCCGGTGAAAGAATCTTGAGATGTTGGGGAGGGGGTGGAAGTAGCAAACCCGGATGGGAAATCGAAGATGTTAAAGATATGATCGGAAAATTGTTAGAGGAATACGAATCTGGTGGCGATATAAGAGAAGCTTGTAGATGCATGAAAGAATTAGGAATGCCATTTTTTCATCATGAAGTTGTTAAGAAAAGTTTGGTGAAAATTATTGAAAAGAAAAATGAAAGATTATGGGGTTTACTTAAAGAATGTTTTGATTCTGGATTAATAACTATGAATCAAATGGTTAAAGGTTTTGGAAGACTTGAAGAAACTCTTGATGATTTAGCTTTGGATGTTCCTGATGCTAAGAATCAATTTGGATTTTATGTTGAAAAGGCAAAAAATGAAGGATGGTTGGATAGTTCATATTGTTACAACAATGCTATAGAGAATGGCACATGCTAA 2145 0.3837 MDFNDGYVSKEHRELHRSASESVDPVSVSPLQLSPPKSPKSPKSPRSPKAQVKGSNLSPKNNKQSHSSKDGRPKKGGSGGKGTWGGLLDTDDGNSLDPNDPNYDSTEEYDESTEKKTNTALEEYKKKATVIVEEYFATDDVVATMSELREVGKPEYSYYFVKKLVSMSMDRHDKEKEMAAILLSALYADIIHPSQVYKGFTKLVESADDLIVDIPDTVDILALFIARAVVDDILPPAFLKKQIANLPNDSKGAEVLKKAEKSYLTAPLHAEIIERRWGGSKNTTVDDVKARINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAETPLLDLLKEAAEEGFINTSQMSKGFSRLIETVDDLSLDIPNARGILQQLMSKAASEGWLCVSSLKSLTIEPEKNTIQENVARSFKMKTQSIIQEYFLSGDIFEVNSCLEQENNKNCGELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPPDDVVSGFVMLIESAHDTALDNPVVVEDLAMFLARSVVDEVLAPQQLEDIGTQCLSQDSIGNKVLLMAKSLLKARLAGERILRCWGGGGSSKPGWEIEDVKDMIGKLLEEYESGGDIREACRCMKELGMPFFHHEVVKKSLVKIIEKKNERLWGLLKECFDSGLITMNQMVKGFGRLEETLDDLALDVPDAKNQFGFYVEKAKNEGWLDSSYCYNNAIENGTC 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01017 714 PANTHER PROGRAMMED CELL DEATH 4 32 703 IPR039778 GO:0045892
Trre12g01017 714 SUPERFAMILY ARM repeat 421 580 IPR016024 -
Trre12g01017 714 ProSiteProfiles MI domain profile. 590 709 IPR003891 -
Trre12g01017 714 ProSiteProfiles MI domain profile. 123 244 IPR003891 -
Trre12g01017 714 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g01017 714 SUPERFAMILY ARM repeat 586 704 IPR016024 -
Trre12g01017 714 FunFam programmed cell death protein 4 412 567 - -
Trre12g01017 714 ProSiteProfiles MI domain profile. 287 408 IPR003891 -
Trre12g01017 714 Gene3D - 111 264 - -
Trre12g01017 714 Gene3D - 411 566 - -
Trre12g01017 714 Gene3D - 274 406 - -
Trre12g01017 714 Gene3D - 574 706 - -
Trre12g01017 714 SUPERFAMILY ARM repeat 120 281 IPR016024 -
Trre12g01017 714 MobiDBLite consensus disorder prediction 44 64 - -
Trre12g01017 714 Pfam MA3 domain 423 533 IPR003891 -
Trre12g01017 714 Pfam MA3 domain 592 700 IPR003891 -
Trre12g01017 714 Pfam MA3 domain 289 398 IPR003891 -
Trre12g01017 714 Pfam MA3 domain 125 235 IPR003891 -
Trre12g01017 714 MobiDBLite consensus disorder prediction 1 117 - -
Trre12g01017 714 SUPERFAMILY ARM repeat 284 405 IPR016024 -
Trre12g01017 714 FunFam programmed cell death protein 4 113 266 - -
Trre12g01017 714 ProSiteProfiles MI domain profile. 422 543 IPR003891 -
Trre12g01017 714 SMART ma3_7 288 399 IPR003891 -
Trre12g01017 714 SMART ma3_7 591 700 IPR003891 -
Trre12g01017 714 SMART ma3_7 124 235 IPR003891 -
Trre12g01017 714 SMART ma3_7 423 534 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01017 Trre-Chr12 10180533 10183841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01017 598 687 Eukaryotic Initiation Factors Gene Family AT4G30680 33.333 2.09e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01017 - - gmx:102668745 1130.55