Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00986 ATGCAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGCGGCTAGGCTTAAAAGGGAAGACATGGAATGAGGCATTACTTTACAATTCAAAACAAAACGAGTCTAGGAAAAGGGCATTTGGAAATGATGTTACAAACAGTAGCTTTGCATACTGTTACAACAACATGGTAGTGTTTATTGTTGGTAGTTCTAAAATATTATCATCATTAGATCATAAAAAACCATTGTTGGAACAACTTGAGAATGCTTTTTCCATTAAGGAATCTCCAATTTGGATGGATTGTAGTACAACTGCTGAGTGTAGGGCAATAGAGAATGCTTTTGGTGGTGCTTTGGAGTTGGCTAAAGTGACCGGATCGCGTGCTTATGAAAGATTTACGGGTCCTCAGATTAAGAAAATATTTGATCATCAGCCGGAAATTTATAATAATACCGAGAGAATCTCGCTTGTTAGTTCCTTTATGGCGTCACTTTTTATCAGTGCTTATGCTGCTATTGATCATTCTGATGGTGCATGCATGAATTTAATGGACATCAAGGAAAAGGCTTGGTCTAAAGTTGCACTTGAGGCAACTGCCACTGATTTGGAGTCGAAACTCGGAAATTTGGCCCCTGCGTATGGTGTTGCTGGAAATATTGCTTCGTATTTTGTTGAGAGATTTGTTTCATTTATTTTTTGTTTCTCCTTTAGAATGCAAGAGGGCAGTGGTGGGGATCTTGTGGATAAGGATGGCATGGTGGTGAATGGGGAAGGTGAAAGGAAGAAGACTAGAGTGCTGAATATGAGCGACACAGTTCCACTTGACTTGCACGTCCAGAATGATACGTTGTCTACATTAAGGCATAGTAAGGTTGGTTTCTTCAAAGAATCCATGGATTACCAATCTTTCTATGATAGACTTCTTGTGGAGGGACAATTTGAAGTGAAGGTGACTTTCATGGGTGGTAACATGGTCCTGCTACAAAGTCCATGTGAAGGGGAATTGGAAGAGGTGATGAGGTTCAATAAGGTGTGGTGGGACAAATGCTTTACGAAAATCATTCCCTGGAAGCCTAATCTCTTGTCTGAATGTAGAGAGATTTGGATTCAAGTGTATGGTATCCCACTACATGTGTGGGACGAAGGCAGCTTCAAAATGATAGCAGGAAGGTTTGGGGTGTTCTTGGACTTTGATGAGGCCACAGTGGCAAAGCAAAGACTGGATGTGGCTAGAGTGAAACTGAGGACTGTTAGGAGGGGAATGATTGACACGGTTCTGCAGCTATGTGTGCAAGGGGTTTTGTATGATGTTTGGGTGGTGGAGGAGAGATGTAGTTTTGGGGAGGAGAGATCGCTTGAACGGGAAGATGGGTTTCAGAATGAAAGGACTTCAAACAGTTGCTCCGATGAGAATGGTGGGATCTCCGGTGAACTAGGGTGGAAGGGAGATGATGGAGACTTGTTTTCAGATGGCAGGAGTGACAGTGAGGGGTCAGCATCCTACAATGTACTTTTAGGGCTACAAGAAGAGGTAAGACAACAACCTGCGTCGGTGATAGATGTTATTGAAGGAATAAGAAACATTGACTCTCAAAGTCAATCTGATGGGGTGATGATGGTTGGGGAAAGTGTGTCAGGAGAGCCAACCCTGGAAGAACACGTGGAGGAGGGAGGAGAATGCTTTTCTCTAATCCCAAGTGGTATTGGGGTTGTTGAGCAGATCGAAGTACGAGGTGTCTTTGTGGAGCCCGTGGCTGATCACTCAAATATTTTAGTGGAGGAGCGTGCTTTGTTGGAGAATACGGAACATTTGGGAGATGACGTGGTCCATTCGGCTGGACCTTTTGAGTTGGATCGGGTGGTTCGGCCTGTTGAGCCTATCTGTGCCCCTTGGAACCCTGTTACTGAACCAGAAGTCAATATTTCAAGGGCCCAAAAGCAAAACTCCGTGGACGGGTGTGAAGAGCAAAGGGAGGGGGTGCAGAAGCAACAAGAGGTGGGGATAGAAGTAGCTGCAAATGGAGGGTTGTGTGGGGACGATGTTGTGAGAATATCTCAACTATCAGAATCTTCTGGTGATTCCATGCCAGATAGAGGTGGTCGATCTAGGAAGAAAAACCCCAAAGGTGGACCTTATAATTCACCACGGCCAATCCCTCCTCTTATAGGGATCCCAAAATGCCGTCAACTTGAGATGTCAATGAAAGTGGCAGGTCGAAGACGGAAGGAGGTGGTGAAGAACAATCAAAGTATAGCTCCAACTCCGACTCAACATTTGCAGCAACAGGGAGAGGCAGATGTTCCTGCAATTGATCTGGAAGTAGTTCTACCTATGCCAAATTATGGTCTAAACCTTCTCTTTGATAATGAGGGGGGTTTTATTCCAGAGTCGTCTTCTGAAACTGGAGGAGCAGAGGACCCAAAGGTGGAAGAGGCAAAGACCCTGATTGGAATTCAAAAAGATGTAGGGGTGTCGTTTGTGATGGGGGAGGAGGAGATACAAAACAAACTTGTGGAACTTGATGATTCTGACAAATTGAAGATTGTGGAGTTGGAGCAAGAAAATGTTTCCTGA 2559 0.4431 MQTHTTDTRKPAFRRLGLKGKTWNEALLYNSKQNESRKRAFGNDVTNSSFAYCYNNMVVFIVGSSKILSSLDHKKPLLEQLENAFSIKESPIWMDCSTTAECRAIENAFGGALELAKVTGSRAYERFTGPQIKKIFDHQPEIYNNTERISLVSSFMASLFISAYAAIDHSDGACMNLMDIKEKAWSKVALEATATDLESKLGNLAPAYGVAGNIASYFVERFVSFIFCFSFRMQEGSGGDLVDKDGMVVNGEGERKKTRVLNMSDTVPLDLHVQNDTLSTLRHSKVGFFKESMDYQSFYDRLLVEGQFEVKVTFMGGNMVLLQSPCEGELEEVMRFNKVWWDKCFTKIIPWKPNLLSECREIWIQVYGIPLHVWDEGSFKMIAGRFGVFLDFDEATVAKQRLDVARVKLRTVRRGMIDTVLQLCVQGVLYDVWVVEERCSFGEERSLEREDGFQNERTSNSCSDENGGISGELGWKGDDGDLFSDGRSDSEGSASYNVLLGLQEEVRQQPASVIDVIEGIRNIDSQSQSDGVMMVGESVSGEPTLEEHVEEGGECFSLIPSGIGVVEQIEVRGVFVEPVADHSNILVEERALLENTEHLGDDVVHSAGPFELDRVVRPVEPICAPWNPVTEPEVNISRAQKQNSVDGCEEQREGVQKQQEVGIEVAANGGLCGDDVVRISQLSESSGDSMPDRGGRSRKKNPKGGPYNSPRPIPPLIGIPKCRQLEMSMKVAGRRRKEVVKNNQSIAPTPTQHLQQQGEADVPAIDLEVVLPMPNYGLNLLFDNEGGFIPESSSETGGAEDPKVEEAKTLIGIQKDVGVSFVMGEEEIQNKLVELDDSDKLKIVELEQENVS 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00986 852 Gene3D - 45 223 - -
Trre12g00986 852 MobiDBLite consensus disorder prediction 683 718 - -
Trre12g00986 852 Pfam FGGY family of carbohydrate kinases, N-terminal domain 92 218 IPR018484 GO:0005975|GO:0016301
Trre12g00986 852 Pfam Domain of unknown function (DUF4283) 307 408 IPR025558 -
Trre12g00986 852 PANTHER SUGAR KINASE 73 222 - -
Trre12g00986 852 MobiDBLite consensus disorder prediction 450 475 - -
Trre12g00986 852 SUPERFAMILY Actin-like ATPase domain 90 217 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00986 Trre-Chr12 9396296 9400709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00986 2 47 E2F-DP Transcription Factor Family AT3G48160 55.102 5.90e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00986 K00854 - gmx:100778495 272.707