LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g00971	ATGTCCTTGTTAACAGTGGCGCATCAAAGAGATTCAGTTCAGTTCACCGGTGATCGCGATGGTGGTAGTGATGGTGGAAGTTCTAGTGCATCACAATCATTAAATTTCAACCAAATGCAGAGTAATTCTTCAATGGTTTATAGTAGTGATAGAGAATTAACACAAATGGTTTCAGCTCTTACACATGTTTCATCATCAGGGTCTAATCAAATGAGTAATAATGAATGGATTCAAAGAAGTGGTTTTCCAAATGAATCATCTTCATCTTCTTATTCTTCAAGTTCTAGTTCTGGTTTTGTTATGTCCTCTGGATCATGGAGTGGTAATAAAAGAGGGCGTGATGAAGAAAGTAGTGCTTCTAATAATCACTTTTTACAACAAGCTGTTCCTAAACTTTTTAGAACTGTTATGGTACCTTCTCAAGGACAAGGAGAATCTTCATCATCAGTGACTGAAGAAGCTCCAACCACAAGAACAACCATAGCCACCGCCACATCTACAGCAGCGTCATTCGAGGAATCCGGCCAGCAGAGGAGAAGATACAGAGGAGTAAGGCAGAGACCATGGGGAAAATGGGCAGCAGAAATAAGAGATCCACACAAAGCACAAAGAGTATGGCTCGGAACATTTGATACAGCAGAATCTGCAGCAAGAGCTTATGATGAAGCTGCATTGAGATTCAGAGGAAGCAGAGCAAAACTCAACTTCCCAGAAAATGTTAGATCAATTATGCCACCACCACCGCAACCACAACCACAACCACGACCGCAACCACAATCATTATCACAACTTCAATCTTTTCCGGCAGCTGTGGCACCCTCTCGAACACCACAGCCGCCGGTTCAAGGTTCATCTGACTTGATTAGAGACTATTTAGAATATTCTCAAATTCTACAAAGTTCTGGTGATTTTCAACTACAACAAATGCAGCAGCAGCAACAACAACAAATGCAACAACAAGAACATGCTTCTAATTTGGTTCAACAATGGTATTATAATTCACAATTGGCTGCACTTCAATCACATTCAATGTTATCATCATCATCACTTTCTGTACCTTCTAATCTGTCACCTTCAATAGCTACAATTTTACCTTCAACTCAATTTTCAACCTCTTCTAGTTCATTTCCCCTGTTTTCTAGTCAACAAATGGGATTTTTCCGGGCCCCAGAAAATCGTCCACCACCAGGTGGTGGACATGCTGGCGGAACAGAGTTTCCGCCTTCAACGTGGTCAGATACTAGTGGGCATCCACCACCACCTTATGGTTGA	1272	0.4151	MSLLTVAHQRDSVQFTGDRDGGSDGGSSSASQSLNFNQMQSNSSMVYSSDRELTQMVSALTHVSSSGSNQMSNNEWIQRSGFPNESSSSSYSSSSSSGFVMSSGSWSGNKRGRDEESSASNNHFLQQAVPKLFRTVMVPSQGQGESSSSVTEEAPTTRTTIATATSTAASFEESGQQRRRYRGVRQRPWGKWAAEIRDPHKAQRVWLGTFDTAESAARAYDEAALRFRGSRAKLNFPENVRSIMPPPPQPQPQPRPQPQSLSQLQSFPAAVAPSRTPQPPVQGSSDLIRDYLEYSQILQSSGDFQLQQMQQQQQQQMQQQEHASNLVQQWYYNSQLAALQSHSMLSSSSLSVPSNLSPSIATILPSTQFSTSSSSFPLFSSQQMGFFRAPENRPPPGGGHAGGTEFPPSTWSDTSGHPPPPYG	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g00971	423	SUPERFAMILY	DNA-binding domain	180	238	IPR016177	GO:0003677
	Trre12g00971	423	MobiDBLite	consensus disorder prediction	164	184	-	-
	Trre12g00971	423	Pfam	AP2 domain	180	229	IPR001471	GO:0003700\|GO:0006355
	Trre12g00971	423	CDD	AP2	188	239	IPR001471	GO:0003700\|GO:0006355
	Trre12g00971	423	MobiDBLite	consensus disorder prediction	21	108	-	-
	Trre12g00971	423	MobiDBLite	consensus disorder prediction	241	257	-	-
	Trre12g00971	423	FunFam	Ethylene-responsive transcription factor 2	179	238	-	-
	Trre12g00971	423	PRINTS	Ethylene responsive element binding protein signature	203	219	IPR001471	GO:0003700\|GO:0006355
	Trre12g00971	423	PRINTS	Ethylene responsive element binding protein signature	181	192	IPR001471	GO:0003700\|GO:0006355
	Trre12g00971	423	MobiDBLite	consensus disorder prediction	386	423	-	-
	Trre12g00971	423	MobiDBLite	consensus disorder prediction	236	264	-	-
	Trre12g00971	423	ProSiteProfiles	AP2/ERF domain profile.	180	237	IPR001471	GO:0003700\|GO:0006355
	Trre12g00971	423	MobiDBLite	consensus disorder prediction	1	120	-	-
	Trre12g00971	423	PANTHER	DNA-BINDING DOMAIN	123	331	IPR044808	GO:0003700\|GO:0009873
	Trre12g00971	423	SMART	rav1_2	180	243	IPR001471	GO:0003700\|GO:0006355
	Trre12g00971	423	MobiDBLite	consensus disorder prediction	139	158	-	-
	Trre12g00971	423	Gene3D	AP2/ERF domain	179	239	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g00971	Trre-Chr12	9204571	9207062	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g00971	118	240	AP2-EREBP Transcription Factor Family	AT5G61890	52.419	2.12e-34	126

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Trre12g00971		AP2	4.4e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g00971	-		-	psat:127127635	437.187