Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00967 ATGTCTGAGCCAAGTCGAATTCTCTTAGTTACGATTGTTCAAGTGCTGTATCCCATGACAGTGTATGTGCTACGTAAAGTATTTTCTCGCTATGGATACGTGCAAAAGATTGTAACATTTCAGAAGTCAGCCGGCGTTCAAGCTTTCATCCAATATGGAAATTGTCGAAGTGCTGTGGCTGCCAGAGATGCATTTCAGGGACGCAATGTTTATGATGACTGCTGTCAGCTGGACATTCAGTTTTCAAACCTTAAGGAGTTAAAAGTGAACTACAATAATGATTATTCCAGGGACTTCACCAATCCATTTCTGCCTACAGAGCAGAAAGGTCAACCTTCACAATCTGGATATTGTGAAGCAGAAATGTATGGTGTTCAAGGTTCTGGACCTAGGCAAGGTGGATTCTCACATAGGAGTAATGCTGCAGCAATTGAAGCTGCCTTCGGGGGAAATTTGCCTTCTGGAATAACTGGAACAAATGAAAGGTGTACAATTCTTGTCGCAAATCTCAATCCTGATAGAATCGACGAGGAAAAGCTGTTCAACTTGTTCTCTATTTATGGGAACATTATGAGAATCAAAATTCTCCGAAATATACCAGGCCATGCACTTGTTCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTACACTTTCTGAAGGGTGCCATGTTGTTTGGAAAGCAATTGGACGTGAACTTCTCAACGTATCCAAGCATAACTCAAGGTGCTGATACGCATGAATACAAGAACTCGAATCTCAATAGATTCAATCGAAATGCTGCTAAAAACTACCGGTATTGTTGCTCCCCGACAAGGATTATCCACGTGTCCTCCCTTCCACAAGACATTAGTGAGGGTGAGCTTGCAAGTCTTCTTGTGGAGCACGGAATAATTGTCAACATCAGAGTCTTTGAGACGAATGGGAAAAAGCAGGCTTTTGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTTGTCTGCAAGCATGCAGTTTCGCTTTCTGGCTGGTTGATCCGGATTTCCTTTTCACAGTTGCAGAAAATATGA 1053 0.4283 MSEPSRILLVTIVQVLYPMTVYVLRKVFSRYGYVQKIVTFQKSAGVQAFIQYGNCRSAVAARDAFQGRNVYDDCCQLDIQFSNLKELKVNYNNDYSRDFTNPFLPTEQKGQPSQSGYCEAEMYGVQGSGPRQGGFSHRSNAAAIEAAFGGNLPSGITGTNERCTILVANLNPDRIDEEKLFNLFSIYGNIMRIKILRNIPGHALVQMGDGFQAELAVHFLKGAMLFGKQLDVNFSTYPSITQGADTHEYKNSNLNRFNRNAAKNYRYCCSPTRIIHVSSLPQDISEGELASLLVEHGIIVNIRVFETNGKKQAFVQFETEEQATEALVCKHAVSLSGWLIRISFSQLQKI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00967 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 250 - -
Trre12g00967 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 331 IPR000504 GO:0003723
Trre12g00967 350 SUPERFAMILY RNA-binding domain, RBD 155 244 IPR035979 GO:0003676
Trre12g00967 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 237 IPR000504 GO:0003723
Trre12g00967 350 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 328 - -
Trre12g00967 350 SUPERFAMILY RNA-binding domain, RBD 265 348 IPR035979 GO:0003676
Trre12g00967 350 Gene3D - 257 350 IPR012677 -
Trre12g00967 350 SMART rrm1_1 274 343 IPR000504 GO:0003723
Trre12g00967 350 SMART rrm1_1 10 78 IPR000504 GO:0003723
Trre12g00967 350 SMART rrm1_1 164 233 IPR000504 GO:0003723
Trre12g00967 350 Gene3D - 4 109 IPR012677 -
Trre12g00967 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 347 IPR000504 GO:0003723
Trre12g00967 350 Pfam RRM-like domain 5 82 IPR021790 -
Trre12g00967 350 Gene3D - 160 256 IPR012677 -
Trre12g00967 350 SUPERFAMILY RNA-binding domain, RBD 3 103 IPR035979 GO:0003676
Trre12g00967 350 CDD RRM3_PTBPH3 162 235 IPR034797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00967 Trre-Chr12 9058590 9064126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00967 162 346 Eukaryotic Initiation Factors Gene Family AT1G22760 24.479 2.53e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00967 K14948 - gmx:100819672 530.02