Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00948 ATGGAGATGAGATGCAAAGAAAATATAGAAATTAGCACAGACATAACACCACCACTCTTACCACTCTCTTTCTCTCTCCACAACACTCATCTCTACACTCACTGCTCCTCTTGTTTCTCTCTCTTAACTCCCAATAATCCCTCAAACAACTCCCATCCCCCATTCTACTGTTCATCTCAATGCTCCACCGCCTATTCCTCCATCCCTCTCTCCTCCGCCGAACACCACCTTCCTTCCTCCACTACCTCCTCCCTCCTCCGCACCGCTCTCCGCCTCCTCCTCCTTTACCCCGACACCACTTCCCTCTCTAATCGATTCAATAATTTACTCACCAACCGTCATTTGCTTACGTGTCAAAACGATGACGTTTCCGAAACTATTCATCTCGGCGGCCGTGCTATGGCCACTGCAATAGCGAAGCAGAGGAGCGACGGCGGACCGTATGATAATGATGCTGTTTTGGAGATAGCGACGGTTGCTCTTTGTGTTGTGCTAACGAACGCTGTTGAGGTGCACGATAACGATGGATGCGCACTTGGGATTGCGGTTTATGAACATGCTTTCTCTTGGATTAATCATAGTTGTTCTCCCAATGCTTGTTACCGTTTCTCATTCTCCAATTCTTCTTCTGTGGTTTCTGTTGAATCAAACCTTTGCATTGCTCCATTCACTCACAATTCTCAACAACTAAAAGGAGATTGTGGAGTTTTTGGAAGCAGAAGTGAATTTGCACAAGGGCGGATGATCTGTGGCCCAAGATTGATTGTGAGGAGTATCAAGAGAATTAAAAAGGGGGAAGAGGTCACTGTAGCATATACTGACCTCCTGCAGCCAAAGGCATTGAGGCAATCAGAACTATGGTCAAAGTATCGGTTTATTTGTTGCTGCAAACGATGTAGTTCTCAGCCCTTCACATACGTGGATCATGCATTGCAAGAAATATCTGTCTCCTGCGGAGATTCATCTGGTTTACATTCCAATTACAATTTCTTCAAAGACACGGCTGATAGAAGATTGACCGATTCAATTGAAGATGTTATATCAGAGTACCTTCTAGTTGGTGATTCTGTGACTTGTTGTGCGAACCTTGAGAAGATTCTCATCGAAGGTCTATATGAGAAGCTAGAGGGAAATGAAACAAAATCACATTTTAAATTTATGCTGCATCCTCTTCACCACCTCTCCTTAAGTTCCTATACAACACTAGCTTCAGCATATAAAGTCCGTGCTAGTGATTTATTATCTGTAGATTCTGAAACAGTTCTTAACCAATCAGAAGCTTTTCATATGAGCAGGACCAGTGCTGCATATTTTTTGTTACTGGCAGGTGCAGCTCATCATCTTTTCATTTCTGAATCATCGCTTATCGCATCGGTTGCTAATTTTTGGATTGGAGCTGGTGAATCTTTGTTAACTCTTACCAGAAATTCAGGATGGAGTAAGTTTGTTAATTTTGATTCGGCTCTGTCAAACCTTGCTTCCAACAATTTTTTAGAATGCTCTAAGTGTTCATTAATGGATAAATTTAAAGCCTGTACATTAAATGGTCAAATCAAAAGTGAAGAATTAGAGAATGTATCAATCGAGTTTATTCATTGTATCTCGGATATTACTCCTAAAGTTTGGAGCTTCCTTGTCTATGGTTCTCATTTTTTACAATTATGTAAAGACCCTATAAATTTCAGTTGGCCAACGTCTTCCGAAAATGACACGTGTTTCACACATGAATCTGAGAATGTCATCAGTGTTCGTGAACAGGCTTACGACGATCAAACAGGAGCACACATTCTTCAGCTTGGTGAACACTGCTTAACATATGGAGGATTATTGGCTTGTATATGTTATGGTCCCCAATCCCATTTGGTTTCTCATATTCAAAATATTATAGATCATTAA 1896 0.4135 MEMRCKENIEISTDITPPLLPLSFSLHNTHLYTHCSSCFSLLTPNNPSNNSHPPFYCSSQCSTAYSSIPLSSAEHHLPSSTTSSLLRTALRLLLLYPDTTSLSNRFNNLLTNRHLLTCQNDDVSETIHLGGRAMATAIAKQRSDGGPYDNDAVLEIATVALCVVLTNAVEVHDNDGCALGIAVYEHAFSWINHSCSPNACYRFSFSNSSSVVSVESNLCIAPFTHNSQQLKGDCGVFGSRSEFAQGRMICGPRLIVRSIKRIKKGEEVTVAYTDLLQPKALRQSELWSKYRFICCCKRCSSQPFTYVDHALQEISVSCGDSSGLHSNYNFFKDTADRRLTDSIEDVISEYLLVGDSVTCCANLEKILIEGLYEKLEGNETKSHFKFMLHPLHHLSLSSYTTLASAYKVRASDLLSVDSETVLNQSEAFHMSRTSAAYFLLLAGAAHHLFISESSLIASVANFWIGAGESLLTLTRNSGWSKFVNFDSALSNLASNNFLECSKCSLMDKFKACTLNGQIKSEELENVSIEFIHCISDITPKVWSFLVYGSHFLQLCKDPINFSWPTSSENDTCFTHESENVISVREQAYDDQTGAHILQLGEHCLTYGGLLACICYGPQSHLVSHIQNIIDH 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00948 631 CDD SET_SMYD 161 299 - -
Trre12g00948 631 SUPERFAMILY SET domain 167 301 IPR046341 -
Trre12g00948 631 Gene3D Tetratricopeptide repeat domain 274 414 IPR011990 GO:0005515
Trre12g00948 631 Gene3D SET domain 148 272 IPR046341 -
Trre12g00948 631 Pfam SET domain 186 272 IPR001214 GO:0005515
Trre12g00948 631 PANTHER PROTEIN SET DOMAIN GROUP 41 1 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00948 Trre-Chr12 8875809 8880549 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre12g00948 SET 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00948 - - aprc:113867790 711.835