Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00947 ATGGGAATGGAGATGAGATGCAAAGAAAATATAGAAATTAGCACAGACATAACACCACCACTCTTACCACTCTCTTTCTCTCTCCACAACACTCATCTCTACACTCACTGCTCCTCTTGTTTCTCTCTCTTAACTCCCAATAATCCCTCAAACAACTCCCATCCCCCATTCTACTGTTCATCTCAATGCTCCACCGCCTATTCCTCCATCCCTCTCTCCTCCGCCGAACACCACCTTCCTTCCTCCACTACCTCCTCCCTCCTCCGCACCGCTCTCCGCCTCCTCCTCCTTTACCCCGACACCACTTCCCTCTCTAATCGATTCAATAATTTACTCACCAACCGTCATTTGCTTACGTGTCAAAACGATGACGTTTCCGAAACTATTCATCTCGGCGGCCGTGCTATGGCCACTGCAATAGCGAAGCAGAGGAGCGACGGCGGACCGTATGATAATGATGCTGTTTTGGAGATAGCGACGGTTGCTCTTTGTGTTGTGCTAACGAACGCTGTTGAGGTGCACGATAACGATGGATGCGCACTTGGGATTGCGGTTTATGAACATGCTTTCTCTTGGATTAATCATAGTTGTTCTCCCAATGCTTGTTACCGTTTCTCATTCTCCAATTCTTCTTCTGTGGTTTCTGTTGAATCAAACCTTTGCATTGCTCCATTCACTCACAATTCTCAACAACTAAAAGGAGATTGTGGAGTTTTTGGAAGCAGAAGTGAATTTGCACAAGAAGGGCGGATGATCTGTGGCCCAAGATTGATTGTGAGGAGTATCAAGAGAATTAAAAAGGGGGAAGAGGTCACTGTAGCATATACTGACCTCCTGCAGCCAAAGGCATTGAGGCAATCAGAACTATGGTCAAAGTATCGGTTTATTTGTTGCTGCAAACGATGTAGTTCTCAGCCCTTCACATACGTGGATCATGCATTGCAAGAAATATCTGTCTCCTGCGGAGATTCATCTGGTTTACATTCCAATTACAATTTCTTCAAAGACACGGCTGATAGAAGATTGACCGATTCAATTGAAGATGTTATATCAGAGTACCTTCTAGTTGGTGATTCTGTGACTTGTTGTGCGAACCTTGAGAAGATTCTCATCGAAGGTCTATATGAGAAGCTAGAGGGAAATGAAACAAAATCACATTTTAAATTTATGCTGCATCCTCTTCACCACCTCTCCTTAAGTTCCTATACAACACTAGCTTCAGCATATAAAGTCCGTGCTAGTGATTTATTATCTGTAGATTCTGAAACAGTTCTTAACCAATCAGAAGCTTTTCATATGAGCAGGACCAGTGCTGCATATTTTTTGTTACTGGCAGGTGCAGCTCATCATCTTTTCATTTCTGAATCATCGCTTATCGCATCGGTTGCTAATTTTTGGATTGGAGCTGGTGAATCTTTGTTAACTCTTACCAGAAATTCAGGATGGAGTAAGTTTGTTAATTTTGATTCGGCTCTGTCAAACCTTGCTTCCAACAATTTTTTAGAATGCTCTAAGTGTTCATTAATGGATAAATTTAAAGCCTGTACATTAAATGGTCAAATCAAAAGTGAAGAATTAGAGAATGTATCAATCGAGTTTATTCATTGTATCTCGGATATTACTCCTAAAGTTTGGAGCTTCCTTGTCTATGGTTCTCATTTTTTACAATTATGTAAAGACCCTATAAATTTCAGTTGGCCAACGTCTTCCGAAAATGACACGTGTTTCACACATGAATCTGAGAATGTCATCAGTGTTCGTGAACAGGCTTACGACGATCAAACAGGAGCACACATTCTTCAGCTTGGTGAACACTGCTTAACATATGGAGGATTATTGGCTTGTATATGTTATGGTCCCCAATCCCATTTGGTTTCTCATATTCAAAATATTATAGATCATTAA 1905 0.4136 MGMEMRCKENIEISTDITPPLLPLSFSLHNTHLYTHCSSCFSLLTPNNPSNNSHPPFYCSSQCSTAYSSIPLSSAEHHLPSSTTSSLLRTALRLLLLYPDTTSLSNRFNNLLTNRHLLTCQNDDVSETIHLGGRAMATAIAKQRSDGGPYDNDAVLEIATVALCVVLTNAVEVHDNDGCALGIAVYEHAFSWINHSCSPNACYRFSFSNSSSVVSVESNLCIAPFTHNSQQLKGDCGVFGSRSEFAQEGRMICGPRLIVRSIKRIKKGEEVTVAYTDLLQPKALRQSELWSKYRFICCCKRCSSQPFTYVDHALQEISVSCGDSSGLHSNYNFFKDTADRRLTDSIEDVISEYLLVGDSVTCCANLEKILIEGLYEKLEGNETKSHFKFMLHPLHHLSLSSYTTLASAYKVRASDLLSVDSETVLNQSEAFHMSRTSAAYFLLLAGAAHHLFISESSLIASVANFWIGAGESLLTLTRNSGWSKFVNFDSALSNLASNNFLECSKCSLMDKFKACTLNGQIKSEELENVSIEFIHCISDITPKVWSFLVYGSHFLQLCKDPINFSWPTSSENDTCFTHESENVISVREQAYDDQTGAHILQLGEHCLTYGGLLACICYGPQSHLVSHIQNIIDH 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00947 634 Gene3D SET domain 150 275 IPR046341 -
Trre12g00947 634 PANTHER PROTEIN SET DOMAIN GROUP 41 3 633 - -
Trre12g00947 634 Gene3D Tetratricopeptide repeat domain 277 417 IPR011990 GO:0005515
Trre12g00947 634 SUPERFAMILY SET domain 169 304 IPR046341 -
Trre12g00947 634 Pfam SET domain 187 275 IPR001214 GO:0005515
Trre12g00947 634 CDD SET_SMYD 163 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00947 Trre-Chr12 8875809 8880555 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre12g00947 SET 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00947 - - aprc:113867790 717.998