Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00946 ATGGAAGGTGATATTGATTCCATGGGAATGGAGATGAGATGCAAAGAAAATATAGAAATTAGCACAGACATAACACCACCACTCTTACCACTCTCTTTCTCTCTCCACAACACTCATCTCTACACTCACTGCTCCTCTTGTTTCTCTCTCTTAACTCCCAATAATCCCTCAAACAACTCCCATCCCCCATTCTACTGTTCATCTCAATGCTCCACCGCCTATTCCTCCATCCCTCTCTCCTCCGCCGAACACCACCTTCCTTCCTCCACTACCTCCTCCCTCCTCCGCACCGCTCTCCGCCTCCTCCTCCTTTACCCCGACACCACTTCCCTCTCTAATCGATTCAATAATTTACTCACCAACCGTCATTTGCTTACGTGTCAAAACGATGACGTTTCCGAAACTATTCATCTCGGCGGCCGTGCTATGGCCACTGCAATAGCGAAGCAGAGGAGCGACGGCGGACCGTATGATAATGATGCTGTTTTGGAGATAGCGACGGTTGCTCTTTGTGTTGTGCTAACGAACGCTGTTGAGGTGCACGATAACGATGGATGCGCACTTGGGATTGCGGTTTATGAACATGCTTTCTCTTGGATTAATCATAGTTGTTCTCCCAATGCTTGTTACCGTTTCTCATTCTCCAATTCTTCTTCTGTGGTTTCTGTTGAATCAAACCTTTGCATTGCTCCATTCACTCACAATTCTCAACAACTAAAAGGAGATTGTGGAGTTTTTGGAAGCAGAAGTGAATTTGCACAAGAAGGGCGGATGATCTGTGGCCCAAGATTGATTGTGAGGAGTATCAAGAGAATTAAAAAGGGGGAAGAGGTCACTGTAGCATATACTGACCTCCTGCAGCCAAAGGCATTGAGGCAATCAGAACTATGGTCAAAGTATCGGTTTATTTGTTGCTGCAAACGATGTAGTTCTCAGCCCTTCACATACGTGGATCATGCATTGCAAGAAATATCTGTCTCCTGCGGAGATTCATCTGGTTTACATTCCAATTACAATTTCTTCAAAGACACGGCTGATAGAAGATTGACCGATTCAATTGAAGATGTTATATCAGAGTACCTTCTAGTTGGTGATTCTGTGACTTGTTGTGCGAACCTTGAGAAGATTCTCATCGAAGGTCTATATGAGAAGCTAGAGGGAAATGAAACAAAATCACATTTTAAATTTATGCTGCATCCTCTTCACCACCTCTCCTTAAGTTCCTATACAACACTAGCTTCAGCATATAAAGTCCGTGCTAGTGATTTATTATCTGTAGATTCTGAAACAGTTCTTAACCAATCAGAAGCTTTTCATATGAGCAGGACCAGTGCTGCATATTTTTTGTTACTGGCAGGTGCAGCTCATCATCTTTTCATTTCTGAATCATCGCTTATCGCATCGGTTGCTAATTTTTGGATTGGAGCTGGTGAATCTTTGTTAACTCTTACCAGAAATTCAGGATGGAGTAAGTTTGTTAATTTTGATTCGGCTCTGTCAAACCTTGCTTCCAACAATTTTTTAGAATGCTCTAAGTGTTCATTAATGGATAAATTTAAAGCCTGTACATTAAATGGTCAAATCAAAAGTGAAGAATTAGAGAATGTATCAATCGAGTTTATTCATTGTATCTCGGATATTACTCCTAAAGTTTGGAGCTTCCTTGTCTATGGTTCTCATTTTTTACAATTATGTAAAGACCCTATAAATTTCAGTTGGCCAACGTCTTCCGAAAATGACACGTGTTTCACACATGAATCTGAGAATGTCATCAGTGTTCGTGAACAGGCTTACGACGATCAAACAGGAGCACACATTCTTCAGCTTGGTGAACACTGCTTAACATATGGAGGATTATTGGCTTGTATATGTTATGGTCCCCAATCCCATTTGGTTTCTCATATTCAAAATATTATAGATCATTAA 1926 0.4133 MEGDIDSMGMEMRCKENIEISTDITPPLLPLSFSLHNTHLYTHCSSCFSLLTPNNPSNNSHPPFYCSSQCSTAYSSIPLSSAEHHLPSSTTSSLLRTALRLLLLYPDTTSLSNRFNNLLTNRHLLTCQNDDVSETIHLGGRAMATAIAKQRSDGGPYDNDAVLEIATVALCVVLTNAVEVHDNDGCALGIAVYEHAFSWINHSCSPNACYRFSFSNSSSVVSVESNLCIAPFTHNSQQLKGDCGVFGSRSEFAQEGRMICGPRLIVRSIKRIKKGEEVTVAYTDLLQPKALRQSELWSKYRFICCCKRCSSQPFTYVDHALQEISVSCGDSSGLHSNYNFFKDTADRRLTDSIEDVISEYLLVGDSVTCCANLEKILIEGLYEKLEGNETKSHFKFMLHPLHHLSLSSYTTLASAYKVRASDLLSVDSETVLNQSEAFHMSRTSAAYFLLLAGAAHHLFISESSLIASVANFWIGAGESLLTLTRNSGWSKFVNFDSALSNLASNNFLECSKCSLMDKFKACTLNGQIKSEELENVSIEFIHCISDITPKVWSFLVYGSHFLQLCKDPINFSWPTSSENDTCFTHESENVISVREQAYDDQTGAHILQLGEHCLTYGGLLACICYGPQSHLVSHIQNIIDH 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00946 641 Gene3D - 86 177 - -
Trre12g00946 641 Gene3D SET domain 30 217 IPR046341 -
Trre12g00946 641 PANTHER PROTEIN SET DOMAIN GROUP 41 10 640 - -
Trre12g00946 641 Gene3D SET domain 260 309 IPR046341 -
Trre12g00946 641 CDD SET_SMYD 170 309 - -
Trre12g00946 641 Gene3D - 43 85 - -
Trre12g00946 641 SUPERFAMILY SET domain 176 311 IPR046341 -
Trre12g00946 641 Pfam SET domain 194 282 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00946 Trre-Chr12 8875809 8880576 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre12g00946 SET 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00946 - - aprc:113867790 717.998