Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00934 ATGAGTAATACTAATCTCATCAAATTTATATTATCAATAACAACATCTTTCTCTCTAACCCAATTAATCCCATACCTAATATGCTTTTTAATTTACCTTCTTTTCCTTGAACAGATCTCATACCTCACCAAAAAAAGGTTAATTCCAGGTCCATCTTTTGTTCTTCCAATTATAGGCAATGCAATCCCATTGGTCCGTGACACAACAAAATTTTGGGAGCATCAATCCATTCTAGCAAAATCAACCCCTTTGGGCTTTTCGGTTAACTACATATTAGGCAACTTCATAGTCTTCATTAGAGACACAGAACTCTCTCGTAAGGTTTTCATCAATGCTAAGCCCAATGCTTTTCAGCCCATGGCCCACCCATTTGGTAAGAAGATATTTGGTGAGCATAATCTTCATTACATGGTGGGCCAAGAACACAAGAACCTCCGCAGTCGGATCGCACCCAACTTCACTCCGAATGCACTTTCCACCTATACCTCATTGCAGCATATTATTATTCTCAAACACCTTAAGTCATGGGTTGAGAAAGCCCATGGTGACTCGATTCCACTACGTCTACTGGCCCGTGATATGAATTTAGAAACATCTCAGACTGTTTTTGTGGGGTCGTATTTGGGCGTAAAAGCCCGGGAGATATTTGAACGTGATTACTTTCTCATTAACGCTGGTCTAACGAAGCTTCCCATTGACTTTCCGGGGACTGCGTTTTGTAATGCAAGAATCGCATGTAAACATATTGCCGAAACCCTAGCTAATTGCACAACAATGAGTAGGGAAAAGATGGAGAAAGGCGAAGAGCCTTCATGTCTCATTGATTTCTGGATGCAGGATACAATAAGAGAGGTTGAGGAATCGAAGGTTAACGGAGTTATGGTGCCACCATTTTCCACCGACGCTGAGATTGGCGGCTATCTCTTCGATTTCCTCTTCGCAGCACAAGATGCATCCACATCGTCATTGTTATGGGCGGTGGTATTGTTAGATTTGCATCCGGAGGTTCTTGTCAAAGTCAGGGAGGAAGTCGATGCAGTCTGGTCTCCAGAGTCAGACACACTTTTAACTTCAGAGCAACTGAACACATTGAAGTACACACAAGCGGTTGCGCGTGAGGTTGTTAGGTATAGACCACCAGCAACTGTTGTGCCGCATATTGCAACAGAGAAGTTTCCGTTAACAGAATCATACTCGATTCCGAAAGGAACAATTGTTTTTCCTTCGGTGCTCGAGTCATCATATCAAGGATTTACTGAACCAGGTCGGTTCGATCCAGAACGATTCTCAGAAGGAAGAAAAGAGGATCAAATATTTAAAAGAAACTTCCTAGCATTTGGAGTTGGGCCCCACCAATGTGTGGGCCAGAGATACGTTTTGAATCAACTTGTTTTGTTTATTTCTATGTTCACATCTTTGATTGAGTTCAGGAGAGATAGAACAAATGGTTGTGATGAGACCGTGTATGTTCCTACAATTTGTCCTAAAGATGACTGCAAGGTTTTTCTATCTAAGCGCTGCACAAGGTACCCTTCCGTTCATGGGGTTGTGGAGCTTGTGAAATGA 1566 0.4221 MSNTNLIKFILSITTSFSLTQLIPYLICFLIYLLFLEQISYLTKKRLIPGPSFVLPIIGNAIPLVRDTTKFWEHQSILAKSTPLGFSVNYILGNFIVFIRDTELSRKVFINAKPNAFQPMAHPFGKKIFGEHNLHYMVGQEHKNLRSRIAPNFTPNALSTYTSLQHIIILKHLKSWVEKAHGDSIPLRLLARDMNLETSQTVFVGSYLGVKAREIFERDYFLINAGLTKLPIDFPGTAFCNARIACKHIAETLANCTTMSREKMEKGEEPSCLIDFWMQDTIREVEESKVNGVMVPPFSTDAEIGGYLFDFLFAAQDASTSSLLWAVVLLDLHPEVLVKVREEVDAVWSPESDTLLTSEQLNTLKYTQAVAREVVRYRPPATVVPHIATEKFPLTESYSIPKGTIVFPSVLESSYQGFTEPGRFDPERFSEGRKEDQIFKRNFLAFGVGPHQCVGQRYVLNQLVLFISMFTSLIEFRRDRTNGCDETVYVPTICPKDDCKVFLSKRCTRYPSVHGVVELVK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00934 521 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 Gene3D Cytochrome P450 40 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 PANTHER CYTOCHROME P450 26 45 471 - -
Trre12g00934 521 CDD CYP61_CYP710 85 499 - -
Trre12g00934 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Trre12g00934 521 FunFam Cytochrome P450 61 38 506 - -
Trre12g00934 521 Pfam Cytochrome P450 49 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 PRINTS E-class P450 group I signature 407 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00934 521 SUPERFAMILY Cytochrome P450 44 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00934 Trre-Chr12 8816726 8818291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00934 19 512 Cytochrome P450 AT2G34500 61.895 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00934 K09832 - gmx:100808148 767.303