Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00922 ATGTCGTTTCGCAGTATTGTTCGTGATGTAAGAGATGGATTTGGAAGTTTATCAAGGAGGAGTTTTGAGGTAAGGCTTCCTATCCATGACAGGGGCAAGTCGAGTAATTTGTCCATGATTCGAACGAGCAAGCCACGTGTAATAGGGAATAGGCGGTGGGCTAGTCTTCCGTTCGAGCTTCTTTGTGATATAATTAAGAGGTTGGAAGAAAGTGAGAGTACATGGCCTGCTCGAAAGCATTTTGTTGCTTGTGCTGCTGTCTGCAAATCTTGGAGAGAAATGTGCAAAGAAATTGCTAGCATTGTTGAGTCCAGTGGGAAGATTACTTTCCCGGTTTCCCTAAAGCATCCTGATTATAGGGATGGACCTATTCAGTGTTTCATCAAGAGAGACAAATCTAATCATACTTACCACCTTTACCTTTGTCTTAGTCCTACCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGAGTAGAAGAACAACTTGCATCGAGTACATTATATCAATGGATGCAGATAACATATCAAAGTCTAGCAGCACTTACATTGGAAAAATAAGGTCAAACTTTCTTGGCACCAAGTTTATAGTTTATGACACACATCCTCCATATAACAATGCTCAAATGCCTCCACTTAATTCAACAAAGGTTTCTCCCAAAGTCCCTACCGGTAACTACAAGATTGCTGAGATCAACTACGAGTTGAATGTCCTCGCTACTAGGGGCCCACGCAAGATGAAATGCATCATGTCCTGGATCCCTATGTCATCCCTAGAGCCCGGTGGAAATGTCCCTGGCCAGCCAGAGCTTCTGCCCTACACCCTCGATGATTCCTTCCGGAGCATATCCTCAAAATCAATCTTTAACTCGTCCGAGTTTGGAAGTTCTAGATTCTTTGACAAAGTTGGGACTGGCAATGAAGAGGAAGGAAAAGACATGCCTATAATTCTCAAGAACAAATCACCAAGATGGCATGAACAACTGCAGTGTTGGTGTCTTAACTTCAGAGGGCGGGTGACCGTTGCGTCCATAAAGAATTTTCAATTGATTGCTTCGACGCATCCAGCAGTAGGTGGTCCTACACCGTCTTCTCAGCCAACACAGTCTGATGATAAGGTTATTCTTCAATTTGGAAAAGTTGGAAAGGATATGTTCACTATGGATTATAGATATCCCTTATCTGCATTTCAGGCTTTTGCTATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAA 1251 0.4237 MSFRSIVRDVRDGFGSLSRRSFEVRLPIHDRGKSSNLSMIRTSKPRVIGNRRWASLPFELLCDIIKRLEESESTWPARKHFVACAAVCKSWREMCKEIASIVESSGKITFPVSLKHPDYRDGPIQCFIKRDKSNHTYHLYLCLSPTLLVENGKFLLSAKRSRRTTCIEYIISMDADNISKSSSTYIGKIRSNFLGTKFIVYDTHPPYNNAQMPPLNSTKVSPKVPTGNYKIAEINYELNVLATRGPRKMKCIMSWIPMSSLEPGGNVPGQPELLPYTLDDSFRSISSKSIFNSSEFGSSRFFDKVGTGNEEEGKDMPIILKNKSPRWHEQLQCWCLNFRGRVTVASIKNFQLIASTHPAVGGPTPSSQPTQSDDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00922 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Trre12g00922 416 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Trre12g00922 416 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Trre12g00922 416 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Trre12g00922 416 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Trre12g00922 416 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Trre12g00922 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Trre12g00922 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Trre12g00922 416 Gene3D Tubby Protein; Chain A 112 416 IPR025659 -
Trre12g00922 416 PANTHER TUBBY-RELATED 46 414 - -
Trre12g00922 416 Pfam F-box domain 53 98 IPR001810 GO:0005515
Trre12g00922 416 CDD F-box_AtTLP-like 53 97 - -
Trre12g00922 416 SUPERFAMILY Tubby C-terminal domain-like 103 416 IPR025659 -
Trre12g00922 416 Gene3D - 48 101 - -
Trre12g00922 416 Pfam Tub family 114 411 IPR000007 -
Trre12g00922 416 SUPERFAMILY F-box domain 37 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00922 Trre-Chr12 8675907 8681221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00922 1 416 TUB Transcription Factor Family AT1G76900 61.099 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre12g00922 Tub 8.8e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00922 K19600 - tcc:18592620 629.017