Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00919 ATGCTAGGGGACTCAGCAGTGTTAGGAACAGGAGGAGGAAGCTCAGGAGATGGAGGAGCTTACCATGACGGCGGAGAGACGGCTGTAGGTGGTGGTGGATCAATTTCAGGAGATGATGAAAGAGGGGGTGGTAGTAGAAATGAAGAGGGTGTGGATAGAAGTTTTGGTGGTAATAGATGGCCAAGACAAGAAACTCTTGCTTTGTTGAAGATAAGGTCAGATATGGATGTTGCTTTTAGAGATGCAAGTGTCAAAGGTCCCTTATGGGATGAAGTTTCAAGGAAAATGGCAGATCTTGGGTATCAAAGAAACTCCAAAAAATGCAAAGAGAAATTTGAAAATGTTTATAAATATCACAAGAGAACCAAAGAAGGAAGAGGTGGTAAATCAGATGGTAAAACTTATAGATTTTTTGATCAATTACAAGCCCTTGAAAATAACCCTTCAATTCAATCACCAAAACCACAACAATTGAACACAACACCATCACAATCATCTACACCTACAACAACAGTTCCATTGCTATTACCACCCCCATTATTAAACTCCACACTTCCTATTGCTATTCCCACCCCTCCCACCACCACTGTTCCATCAACAACTTCACTTCCAATTCCAATGTCTTATACACAATCCAACCCTACAAATTTTCCACCAATGCCAACACCACCCCAAACAACAAACCCTACAAATCCAAATAACCCTCTTCCTCAAATTACTATTACACCCCCGCCGTCTTCATTCCCCAACATTTCAGCAGATTTCTTCTCTAATTCAAGCTCATCTTCAACTTCATCGGAGGAAACGACGACAATGGAAGGTGGATCGAACCGGCGGAAGAGGAAGAGAAAGTGGAAGGATTTTTATGAGAGAATAATGAAGGAAGTTCTTCAGAAACAAGAGGAGTTGCATAAGAGATTCTTGGAAGCTATTGAGAAAAGAGAAAGAGAGAGATGTGCTAGAGAAGAAGCTTGGAGGTCACAAGAGATGCAAAGGATTAATAGAGAAAGGGAAATTCTTGCTCAAGAGAGATCTATTGCTGCTGCTAAAGATGCTGCTGTTATGGCTTTTTTGCAAAAGATTGCTGAACAACAAGAACAACAACAAAATGTTGTTCCTCCTCCATTGAACAATAATGTCATTGTTCCTCAACAACACCAACAAGTGCCGCAAGAAACTACACCGGCACCAACACCAACAGCAAAGCCTTTGCCAACACAACCACCAACACCAGTATCATTGCCAATGCCGACACCACAAGTTCAAACTCCGGTGTCATTGCCAGTTCCAATACCGGCACCAGTTATACCTCAAGTTTCACCGTTGGCACAACAACAGGTACAAGTTCAGCAGCAGCAAGTGACGAATATGGAAATTGTGAAAAGTGACAACAACGGTACTGAGAGTGCGATGCAAGCAAGTTCTTCAAGGTGGCCGAAAACCGAAGTTGAGGCATTGATAAAGCTGAGAACAACTCTTGATTTGAAGTACCAAGAAAATGGACCCAAAGGGCCACTATGGGAGGAGATTTCAAGCTTGATGAAGAACTTGGGGTATAATAGAAATGCAAAGAGGTGCAAAGAGAAATGGGAAAATATTAACAAGTATTTCAAGAAAGTGAAAGAAAGCAACAAGAAGAGACCAGAAGATTCAAAAACATGTCCTTATTTTCACCAACTGGATGCTCTCTACAGGGAGAAGAACAAGGGAGAGGGTGCTGCGGTAGCGAGGCCTGAGGGAACGATGATGGCGCCATTGATGGTTCAGCCGGAGCAGCAGTGGCCTCCACAGCAGCCACCACCAGCAACTGGGGCAGATGTGACAATGGAGGATGCCGAGAAAGACAAGCCGCACCGTGATGAAGAAGGGTATTATGATGAAGACGACGATGAAGAAGAGGAAGATGAAGGCAGTGACAACTATGAAGTGGTTGCCAACAAACCACCCCCACCTCAATAA 1959 0.4339 MLGDSAVLGTGGGSSGDGGAYHDGGETAVGGGGSISGDDERGGGSRNEEGVDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKMADLGYQRNSKKCKEKFENVYKYHKRTKEGRGGKSDGKTYRFFDQLQALENNPSIQSPKPQQLNTTPSQSSTPTTTVPLLLPPPLLNSTLPIAIPTPPTTTVPSTTSLPIPMSYTQSNPTNFPPMPTPPQTTNPTNPNNPLPQITITPPPSSFPNISADFFSNSSSSSTSSEETTTMEGGSNRRKRKRKWKDFYERIMKEVLQKQEELHKRFLEAIEKRERERCAREEAWRSQEMQRINREREILAQERSIAAAKDAAVMAFLQKIAEQQEQQQNVVPPPLNNNVIVPQQHQQVPQETTPAPTPTAKPLPTQPPTPVSLPMPTPQVQTPVSLPVPIPAPVIPQVSPLAQQQVQVQQQQVTNMEIVKSDNNGTESAMQASSSRWPKTEVEALIKLRTTLDLKYQENGPKGPLWEEISSLMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKGEGAAVARPEGTMMAPLMVQPEQQWPPQQPPPATGADVTMEDAEKDKPHRDEEGYYDEDDDEEEEDEGSDNYEVVANKPPPPQ 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00919 652 MobiDBLite consensus disorder prediction 41 55 - -
Trre12g00919 652 PRINTS Proline rich extensin signature 167 179 - -
Trre12g00919 652 PRINTS Proline rich extensin signature 212 224 - -
Trre12g00919 652 PRINTS Proline rich extensin signature 225 246 - -
Trre12g00919 652 PRINTS Proline rich extensin signature 383 408 - -
Trre12g00919 652 PRINTS Proline rich extensin signature 185 201 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 1 59 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 147 171 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 200 215 - -
Trre12g00919 652 FunFam Trihelix transcription factor GT-2 60 121 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 396 419 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 608 623 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 624 639 - -
Trre12g00919 652 CDD GT1 476 541 - -
Trre12g00919 652 Gene3D - 60 121 - -
Trre12g00919 652 Gene3D - 478 539 - -
Trre12g00919 652 ProSiteProfiles Myb-like domain profile. 470 534 IPR001005 -
Trre12g00919 652 MobiDBLite consensus disorder prediction 172 199 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 147 282 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 587 652 - -
Trre12g00919 652 Pfam Myb/SANT-like DNA-binding domain 476 563 IPR044822 -
Trre12g00919 652 Pfam Myb/SANT-like DNA-binding domain 58 144 IPR044822 -
Trre12g00919 652 MobiDBLite consensus disorder prediction 385 419 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 216 244 - -
Trre12g00919 652 SMART sant 474 536 IPR001005 -
Trre12g00919 652 SMART sant 56 118 IPR001005 -
Trre12g00919 652 CDD GT1 58 123 - -
Trre12g00919 652 MobiDBLite consensus disorder prediction 245 272 - -
Trre12g00919 652 ProSiteProfiles Myb-like domain profile. 58 116 IPR001005 -
Trre12g00919 652 Coils Coil 297 317 - -
Trre12g00919 652 PANTHER FI21293P1 38 611 - -
Trre12g00919 652 FunFam Trihelix transcription factor GT-2 478 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00919 Trre-Chr12 8614105 8617286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00919 454 594 Trihelix Transcription Factor Family AT1G76880 66.883 1.97e-61 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre12g00919 Myb_DNA-bind_4 1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00919 - - psat:127127275 776.548