Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00914 ATGGCATCACTCAACCAAGCCAAATTTGACCTTGAACAACAACAATCATCAACAACTAATCTAGAAGTTGAAACAAAAGATTTCGACTACTCGAAAAGATCACAATGGCTAAGAGCAGCTGTTTTAGGAGCTAACGATGGATTAGTCTCTACAGCTTCGCTAATGATGGGAGTTGGTGCGGTCAAGCAAGACATCAAAGTGATGATCTTAACCGGTTTTGCCGGTTTGGTAGCCGGTGCTTGTAGCATGGCGATCGGAGAATTTGTCTCGGTTTATTCTCAATTAGACATTGAAGTTGCTCAAATGAAAAGAGAGAAAGAAAGAGGAAGACAAATTGATGATGATGGTGAAGAGAAGGAGACTTTGCCTAATCCTTTACAAGCTGCAGCTGCATCAGCATTAGCTTTTTCTATTGGTGCAATGGTGCCATTGCTTGCAGCTTTTTTTATAAGAGATTATAAGGTGAGACTTGGTGTTGTTGTAGCGGCAGTTAGTTTTGCTTTGGTTGTTTTTGGTTGGTTTGGGGCTGTGTTGGGTAAGGCTCCAATTTTTAGGTCTGTTTTGAGGGTTTTGATTGGTGGTTGGGTGGCTATGTCCATCACTTTTGGGCTCACTAAGTTGATCGGCTCAAGCGGACTTTAG 642 0.4206 MASLNQAKFDLEQQQSSTTNLEVETKDFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKVMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQMKREKERGRQIDDDGEEKETLPNPLQAAAASALAFSIGAMVPLLAAFFIRDYKVRLGVVVAAVSFALVVFGWFGAVLGKAPIFRSVLRVLIGGWVAMSITFGLTKLIGSSGL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00914 213 CDD Nodulin-21 35 182 - -
Trre12g00914 213 Pfam VIT family 118 205 IPR008217 GO:0005384|GO:0030026
Trre12g00914 213 Pfam VIT family 37 117 IPR008217 GO:0005384|GO:0030026
Trre12g00914 213 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 12 208 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00914 Trre-Chr12 8523774 8524415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00914 5 213 Nodulin-like Gene Family AT3G43660 69.048 2.61e-102 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00914 K22736 - gmx:100815165 334.724