Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00912 ATGGACCCAAAGTTCATCGGAAAACCACCGCCGGTAATAATCGACTTAGAAAACATGCCGGAGCGTGGGTCCCACCACCGTAGATCACACTCCGACACTACCTTCCGTTTCGCCGCTAACTTCGACGACCTTCTCCTCTTCGACCCATCCGACTTCGACATCTCCAATCTTCCACTTCCATCTCCCGTTTCCGACGCCGTTCCAATGACCGTCGATTCTGACGAGTCAAACGGGAAGTCTACTTCGGCGGCGCGTCATTTACGGAGTTTGTCTGTTGATTCTGAGTTTTTTGATGGATTAGGGTTTGGTGGTGGCGGTGGTGAGAAAATTGAAGAAAGGAAGGTGAATCGTCATAGGCATAGTAATTCGATGGATGGTTCTTCAACGACGTCGTTTGATGTTGAGGAAAATTCTATGGTGATGATTGATGGTGTGAAGAAATCTATGCCTCCTGAGAAACTTGCTGAACTTGCTCTTATTGATCCTAAAAGAGCTAAAAGGATTCTTGCTAATAGGCAATCTGCTGCTCGATCGAAGGAGAGGAAAACTCGATATACAAGTGAGCTGGAGAGGAAGGTGCAGACGCTTCAAACCGAAGCAACTAACCTCTCTGCACAACTTACCATTCTTCAGAGAGATACCAATGATTTGACTTCTCAGAATAAGGAGCTCAAGATGAAGTTAGAGGCCTTCGAGCAACAAGCACAACTTAGAGAAGATCTCAACGAAGCGTTGAAGAAAGAACTGCAACGCCTTAGGGCACAAAAGAATCATTTGACTGCCATTGCCGGTAATCCTTCTTTCAATGGGATGTTCTCGCAATTTGCTACACAGTTAACCATGCAACAGATGAGTAATAATCCTCAAACCCAGCAGACACAACCCGGCATGCCGCCTTCTCGTTCCGATCAACATTTCAACGGTCGTGGCCGCCCTAACTTCATGGACTTCAATCACCAGAAGTAG 966 0.4658 MDPKFIGKPPPVIIDLENMPERGSHHRRSHSDTTFRFAANFDDLLLFDPSDFDISNLPLPSPVSDAVPMTVDSDESNGKSTSAARHLRSLSVDSEFFDGLGFGGGGGEKIEERKVNRHRHSNSMDGSSTTSFDVEENSMVMIDGVKKSMPPEKLAELALIDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATNLSAQLTILQRDTNDLTSQNKELKMKLEAFEQQAQLREDLNEALKKELQRLRAQKNHLTAIAGNPSFNGMFSQFATQLTMQQMSNNPQTQQTQPGMPPSRSDQHFNGRGRPNFMDFNHQK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00912 321 MobiDBLite consensus disorder prediction 284 321 - -
Trre12g00912 321 CDD bZIP_plant_RF2 164 213 IPR044759 GO:0003700|GO:0006355
Trre12g00912 321 SMART brlzneu 159 223 IPR004827 GO:0003700|GO:0006355
Trre12g00912 321 FunFam probable transcription factor PosF21 162 215 - -
Trre12g00912 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 224 IPR004827 GO:0003700|GO:0006355
Trre12g00912 321 SUPERFAMILY Leucine zipper domain 163 219 IPR046347 GO:0003700|GO:0006355
Trre12g00912 321 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 296 - -
Trre12g00912 321 Gene3D - 162 216 - -
Trre12g00912 321 Pfam bZIP transcription factor 163 222 IPR004827 GO:0003700|GO:0006355
Trre12g00912 321 Coils Coil 186 262 - -
Trre12g00912 321 MobiDBLite consensus disorder prediction 284 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00912 Trre-Chr12 8485017 8489158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00912 12 310 bZIP Transcription Factor Family AT1G43700 47.917 8.01e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre12g00912 bZIP_1 1.3e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00912 K20557 - gmx:778142 397.127