Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00891 ATGGAGGACTTTTGGAACATGATTTGTGGAGGAAACCCATTGATCCGTTTCGATTTCGAGGTTCTAAAGAATCCTTCATCATGCACCAACAATTTGATGACAATTTGCTTTGATTTGTTATTGTTGATCATGATGTCAACTATTTTGATCAAGAACAAGTCCTTGTTGGGACAATTTTGTGGTTTCATAAGAGTGGAAGGACATTCAAAGTTGCAGCTAGTTTCTTTCATAACCAATGGTTGCATTGGTTTGTTGCATTTGTGCTTAGGAATTTGGATTTTAGAAGAAAAGTTAAGGAAAAATCTCACTATTTTTCCTCTTAATTTGTGGCTGCTAGAACTTCTTCATGGATTCACATGGATTTTAGTTACTTGGACTACAAGTCTTGTACTAAAACAACTTCCAAAAGCATGGTTGTGGCTATGTTCTTTTCTTATATTCTTTGTTTCGGGTATTTTATGTGTTTTTTCGTTATCATATGCATTTATAGATAGTGAATTTTGCATTAAGGTAGTATTAGATGTTTTATCTTTTTTCGGAGCATTTTTGTTGATGTTTTGCACATACAAAGCACGAAAATACGAAGAAACTTACATGGAAATTAATGAAAGTTTAGTTACCCCTTTAAACTACAAGCTAAATGAAGTTGATCATGTTAATCATGTAACCCCATTTGCCAAAGCTGGATTCTTTAGTTTGATGTCATTTTGGTGGTTGAATCCGTTGATGAAAACGGGTCAAGAGAAAACACTTCAGGACGAAGATATGCCAAAGTTGCGAGAGTCTGACCGAGCAGAAAAATGTTATGCATTGTTTATAGATCAACTGAATAGACAGAAGCAGCAGGATAAATCATCACGGTCATTGGTTTTATGGACAATAATTTTGTGCCATCGTAGAGAGATTTTGATATCGGGATTCTTTGCATTAGTCAAGGTACTCGCAATCTCTTCTTGTCCTGTGATTTTGAATGCATTTATTTTGGTGGCCGAGGGTAATAAAAGTTCGAAATATGAAAGTTATGTATTAGCAGTCTCGCTATTGTTTACGAAGATTTTAGAATCCATATCCCAAAGGCAGTGGTATTTTCGCACTAGACTTATTGGTATGAAAATTAAATCATTACTCATCGCAGCCGTTTATAAGAAACAAATGAGGTTATCCAATGCTGCTAGATCGGTTCACTCCGGTGGTGAGATAATGAATTATGTGAATGTTGATGCTTATAGAATCGGAGAATTTCCGTTTTGGTTTCACCATACATGGACAACAGCTCTCCAACTATGTATTGCATTGGTAATTATTTTTCGTGCAGTTGGCCTAGCTACAATTGCATCGTTCGTGGTGATAGTTTTGACTGTGATTTTAAATACTCCATTGGCAAAGTTACAACATCAGTTTCTAAGCAAGCTTCTTGTGGCGCAAGATGAAAGGTTGAAGGCTAGTTCCGAAGCTCTAGTGAATGTTAAAGTGTTGAAGTTATATTCATGGGAAATACATTTTAAAAACGCTATCGAAGGCTTAAGATACGTTGAACTCAAATGGTTATCTTCAGTGTTACTACAAAAAGCATACAATGTCATTCTATTTTGGTTTTCGCCGTTTTTTATCTCTGCTGCGACATTCGGGGCATGTTACTTCTTTAAAGTTCCTCTGCATGCAAATAATCTTTTCACCTTTGTTGCAACAATACGTCTTTTGCAAGATCCGATTTCAACCATCCCAGATGTTATTGGAGTGATCATTCAAGCAAATATTGCATTTGCCCGAATTGTGAGATTCCTTGACGCGCCTGAGCTGCAGAATGCAAATTTTAGTAAGAGTTGCTTCGATGAGAAGTTAAAGGGCTCAATTTTAATCGAATCTGCTGAATTTTCATGGGAATATAATATATCGAAGCCGACAATAAGAAACATAGATTTAAAGGTTAGTGCTGGACAAAAGATAGCCATTTGTGGCGAAGTTGGCTCAGGTAAATCAACTCTCTTAGCAGCAATTCTCGGAGAAATCCCTAATACCAAGGGAAATATCGAAGTTTATGGCACGTTTGCTTATGTTTCTCAAACAGCATGGATACAAACAGGAACAATACAAGAAAATATTTTGTTTGGATCCGAGTTCGATGATCAAAGATATCAAGAAACACTTCATAGGTCTTCACTGATGAAGGACCTTGAATTGTTTCCGTATGGTGATCTAACCGAAATAGGAGAGAGAGGTGTTAATCTAAGCGGAGGTCAAAAGCAGCGAATTCAACTTGCTCGGGCTTTTTATCAGAATGCCGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGACGCGCACACTGCCACTAATTTGTTCAATGAATACATATTGGAAGGACTTGCCGGAAAGACAGTCCTTCTTGTGACTCATCAAGTCGACTTTCTCCCTGCATTTGATTCGGTTTTGTTGATGTCAAATGGAAAAATCCTGCAAGCTGCTCCTTACCATGATCTACTGACCTCTAGCCGAGAATTTACCGACCTTGTCAATGCTCACAAAGAGACTGCTGGTTCCGGTCAACTTGTAGATGTTACTTCATTGCAAAGAGATTCAAGTTCTGATAGAGAGATTAAGAAAAATTTCACGGAGAAGCCGTTTAAAGCTTTAAACGGTGACCAATTAATTATGCAAGAAGAGAGGGAACGAGGAGACGCAGGGTTGAAGCCTTACTTACAATATCTCAATCAGAAAAGAGGCTACATATACTTTTTTCTCGGTTCTCTTTCTCACCTGATGTTTGTGATCTGCCAGATATTGCAAAACTCGTGGATGGCTTCCCGTGTTGACGATCCTCAAGTTAGCACATTACAATTGGTTGTAGTTTACTTGTTGATTGGAGTTATCTCTAATGTTTTCATGATAATCAGAAGTCTTCTTGCTGCTCTATTGGGTTTTCAATCATCAAAACATATATTCTCACAGCTAATGAACTCTCTTTTTCGAGCACCGGTGTCTTTTTATGACTCTACACCTTTAGGAAGGATACTTAGTAGGGTTTCATCTGATTTGAGCATTGTGGATCTTGACATCTCATTTACCCTCACTTATGTCGTCGGATCAACTATATGTTGTTACATGGATCTTATAGTTTTAACATCTTTCACTTGGCAAGTCATGTTTGTCACTATACCAATGGCTTATGTTATTGTAAAGTTACAGAGACACTACTATGCCTGTGCGAAAGAACTTATGCGGATGAATGGAACAACAAAATCTTCTGTAGCTAATCATGTAGCTGAAACTTTTGCTGGAGCTATGACAATAAGGGCTTTTGAGGAAGAAAATCGTTTTCTCGAAAAGAATTTTAATCTAATTGATGTCAATGCCAGTGCTTTCTTTCACAGTTTTGCCTCAAATGAGTGGTTAATCCAACGTGTAGAAACTGCATATGCCGTTGTTCTTGCCTCTGCGGCACTTTGCATTGCTATGCTTCCATTTGGGACCTTAACATCTGGATTTATCGGTATGGCTCTTTCATATGGCCTTTCGCTAAATGGTTCTTTAGTATATTCAATTCAAAGCCAATGCATTATGGCAAATTATATAGTATCTGTAGAAAGGATAAACCAATACACTCATATACCAAGTGAGGCTCAAGAAGGAAATTGTCCTCCAGATAATTGGCCAGTTGTAGGCAAAGTAGAATTACGCGATTTACAGATACGATACAGGCCGAATGAACCACTTGTACTTCACGGTATCACTTGCATATTTGAAGGAGGGCACAAGATCGGTATAGTTGGTAGAACAGGCAGCGGAAAATCCACTCTGATAGGTGCTTTGTTTCGTCTTGTGGAGCCGGCGGGAGGAAAAATTTTAGTTGATGGCATAGACATCTCATCTATCTGCCTTAATGTTTTGAGGTCAAGTTTTGGTATTATACCTCAGGATCCTACCCTTTTCATTGGGACAGTTAGATATAATTTAGACCCTTTATCTCAACATTCTGATCAAGAAATATGGGAGGTTCTTCAAAAGTGTCAGTTGCGAGAGTCTGTTAAAGATAAAGGAGGCTTAGATTCCTCAGTTGTCGAAGACGGATCAAACTGGAGCATTGGACAAAGGCAGCTATTCTGTTTAGGGCGTGCTCTTTTGAGGCGAAGTAAGATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTTCAGAATACCATTAGAAAAGAGTTTGCTGATTCTACAGTGATAACAGTAGCACACAGGATACCAACTGTGATGAATTGCAACATGGTTCTTTCCATAAACGACGGAAAGTTGGTTGAGTATGATGAGCCATTGAAGTTAATGAAGAGAGAAAAATCATTGTTTGGACAACTTGTTAAGGAATATTGGTCTCATTTTCAGTAG 4395 0.3791 MEDFWNMICGGNPLIRFDFEVLKNPSSCTNNLMTICFDLLLLIMMSTILIKNKSLLGQFCGFIRVEGHSKLQLVSFITNGCIGLLHLCLGIWILEEKLRKNLTIFPLNLWLLELLHGFTWILVTWTTSLVLKQLPKAWLWLCSFLIFFVSGILCVFSLSYAFIDSEFCIKVVLDVLSFFGAFLLMFCTYKARKYEETYMEINESLVTPLNYKLNEVDHVNHVTPFAKAGFFSLMSFWWLNPLMKTGQEKTLQDEDMPKLRESDRAEKCYALFIDQLNRQKQQDKSSRSLVLWTIILCHRREILISGFFALVKVLAISSCPVILNAFILVAEGNKSSKYESYVLAVSLLFTKILESISQRQWYFRTRLIGMKIKSLLIAAVYKKQMRLSNAARSVHSGGEIMNYVNVDAYRIGEFPFWFHHTWTTALQLCIALVIIFRAVGLATIASFVVIVLTVILNTPLAKLQHQFLSKLLVAQDERLKASSEALVNVKVLKLYSWEIHFKNAIEGLRYVELKWLSSVLLQKAYNVILFWFSPFFISAATFGACYFFKVPLHANNLFTFVATIRLLQDPISTIPDVIGVIIQANIAFARIVRFLDAPELQNANFSKSCFDEKLKGSILIESAEFSWEYNISKPTIRNIDLKVSAGQKIAICGEVGSGKSTLLAAILGEIPNTKGNIEVYGTFAYVSQTAWIQTGTIQENILFGSEFDDQRYQETLHRSSLMKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARAFYQNADIYLLDDPFSAVDAHTATNLFNEYILEGLAGKTVLLVTHQVDFLPAFDSVLLMSNGKILQAAPYHDLLTSSREFTDLVNAHKETAGSGQLVDVTSLQRDSSSDREIKKNFTEKPFKALNGDQLIMQEERERGDAGLKPYLQYLNQKRGYIYFFLGSLSHLMFVICQILQNSWMASRVDDPQVSTLQLVVVYLLIGVISNVFMIIRSLLAALLGFQSSKHIFSQLMNSLFRAPVSFYDSTPLGRILSRVSSDLSIVDLDISFTLTYVVGSTICCYMDLIVLTSFTWQVMFVTIPMAYVIVKLQRHYYACAKELMRMNGTTKSSVANHVAETFAGAMTIRAFEEENRFLEKNFNLIDVNASAFFHSFASNEWLIQRVETAYAVVLASAALCIAMLPFGTLTSGFIGMALSYGLSLNGSLVYSIQSQCIMANYIVSVERINQYTHIPSEAQEGNCPPDNWPVVGKVELRDLQIRYRPNEPLVLHGITCIFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKILVDGIDISSICLNVLRSSFGIIPQDPTLFIGTVRYNLDPLSQHSDQEIWEVLQKCQLRESVKDKGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQNTIRKEFADSTVITVAHRIPTVMNCNMVLSINDGKLVEYDEPLKLMKREKSLFGQLVKEYWSHFQ 1464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00891 1464 CDD ABCC_MRP_domain1 618 818 - -
Trre12g00891 1464 Pfam ABC transporter transmembrane region 911 1172 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00891 1464 Pfam ABC transporter transmembrane region 303 570 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00891 1464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1217 1453 IPR027417 -
Trre12g00891 1464 Gene3D - 1209 1458 IPR027417 -
Trre12g00891 1464 FunFam ABC transporter C family member 5 876 1208 - -
Trre12g00891 1464 Pfam ABC transporter 1242 1388 IPR003439 GO:0005524
Trre12g00891 1464 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 225 1457 - -
Trre12g00891 1464 Gene3D ABC transporter type 1, transmembrane domain 877 1208 IPR036640 GO:0005524|GO:0016020
Trre12g00891 1464 ProSitePatterns ABC transporters family signature. 743 757 IPR017871 GO:0005524|GO:0016887
Trre12g00891 1464 SUPERFAMILY ABC transporter transmembrane region 287 599 IPR036640 GO:0005524|GO:0016020
Trre12g00891 1464 FunFam ABC transporter C family member 10 602 854 - -
Trre12g00891 1464 Gene3D - 595 857 IPR027417 -
Trre12g00891 1464 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 910 1190 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00891 1464 SMART AAA_5 1250 1432 IPR003593 GO:0016887
Trre12g00891 1464 SMART AAA_5 645 818 IPR003593 GO:0016887
Trre12g00891 1464 FunFam ABC transporter C family member 3 1207 1458 - -
Trre12g00891 1464 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1226 1457 IPR003439 GO:0005524
Trre12g00891 1464 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 841 IPR003439 GO:0005524
Trre12g00891 1464 CDD ABC_6TM_ABCC_D1 304 591 IPR044746 GO:0140359
Trre12g00891 1464 SUPERFAMILY ABC transporter transmembrane region 900 1207 IPR036640 GO:0005524|GO:0016020
Trre12g00891 1464 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 303 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00891 1464 CDD ABCC_MRP_domain2 1222 1441 - -
Trre12g00891 1464 Pfam ABC transporter 637 770 IPR003439 GO:0005524
Trre12g00891 1464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 841 IPR027417 -
Trre12g00891 1464 CDD ABC_6TM_ABCC_D2 909 1202 IPR044726 GO:0140359
Trre12g00891 1464 FunFam ABC transporter C family member 10 286 599 - -
Trre12g00891 1464 Gene3D ABC transporter type 1, transmembrane domain 290 594 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00891 Trre-Chr12 8295313 8300918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00891 582 829 Calmodulin-binding Proteins AT2G36910 28.195 5.87e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00891 K05666 - gmx:100811468 2114.73