Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00890 ATGCTGATTATGCTGTCATTTATGATGTTCTTGAAGTCTTCTTTGAGACCCTTTTGGAGTCGAGTAGGATATTCAAACTTCCAGCTAGTTTCTGCCATAATCAATGGCTCTCTTGGGTTGTTGCATTTATGCTTAGGAATTTGGGTTTTAGAGGAAACATTAAGGAAATCTCACAAAGCATTTCCTCTTAACTTGTGGTTGGTAGAATTCTTTCATGGACTCACATGGTTGTTTGTAAGTTTAACTGTTAGTCTTCGGATAAAACAACCTCGAAAAGCATGGTTATGGCTGTTTTCTATTCTCGTGTTCTTTGCTTCTTGTACATTATGTGTTTTATCTATGTCTTATGCAATTGAAAGAAGAGAATTGTCTGTCAAGGCAACTTTAGATGTTATATCTTTTCTAGGATCAACTTTGCTTTTGTTATGTACTTATAAAGCATGTAATCGTGAAGATTGCGATGCAGACCGAGAAACTGTTGGAAGGCTTTATGCTCCCTTGAATGGAGAGTTCAATGATGTTTCTGAAAGTTATGTCACGCCATTTGCGAAAGCTGGATTATTTAGTAAGATATCATTTTGGTGGTTGAATCCATTGATTAAAAAGGGTCAAGAAAAAACACTTCAAGACGAGGATATTCCAAAGTTAAGAGAGTCTGACCGAGCAGAAAGTTGTTATATGTCATTTGTAGAACAGTTAAGGATACAAAGAGAAAAAGAACCATCATCACATTCATCGGTATTATGGACAATCATAATGTGCCACCGAAGAGAGATTTTGATAACGGGATTCTTTGCTTTGCTCAAGATACTTGCTATATCTTGCGGCCCTCTACTTCTGAATGCCTTTATATTGGTTTCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTCTTCTTCATAAAGATAATAGAATCCTTAGCACAACGACAATGGTATTTTCGCAGTAGAATTGTTGGAATGAAAGTTAGGTCACTACTTACGGCAAACATTTATAAAAAAACATTAAGGCTATCCAATTCTGCTAGATTGATTCACTCTGGTGGCGAGATAATGAATTATATGACAGTGGATGCGTATAGAATTGGAGAATTTCCATTCTGGTTTCACCAAACATGGACAACAATCCTCCAATTGTGTATTGCGTTAGTAATTCTTTTCCGAGCAATTGGACTCGCAACAATAGCTTCAATGGTTGTGATAGTTCTCACGGTGCTTTGCAACACTCCACTAGCAAAGTTACAACACAAGTTTCAGAGCGAACTTATGGTTGCACAAGATGAGAGATTGAAGGCTAGTTCTGAAGCACTTGTGAATATGAAAGTGCTAAAGCTATATGCATGGGAAAATAATTTTAAAAATGCTATAGAAAAGTTAAGAAATGCGGAACTTAAATTGATATCTGCAGTGCAATTAAGTAAGGCATACCTTCTCTTTCTCTTTTGGACCTCACCGGTGTTGGTGTCTGCTGCTTCTTTTCTAGCATGTTACTTCCTTAAAGTTCCTTTGCACGCAAGTAATGTTTTCACTTTTGTAGCAACTCTACGCCTTGTTCAAGAGCCAATTACAGGTATCCCGGATGTCATTACGGTGATCATTCAAGCAAAAGTTGCATTTGCACGGATTAGTAATTTCCTCGAGGCACCAGAACTACAGAATGCAAATTTCAAGAATAAGTGCTTTAAGGACAACCACAAAGGCTCATCAGTTTTAATAAAATATGCTGACTTTTCATGGGAAGGTAATGTATCAAAGCCAACACTAAGAAACATAAATTTGGACGTTAGACGCGGGCTAAAGGTGGCTATTTGCGGAGAAGTTGGCTCAGGAAAATCTACGCTTTTAGCAACAATTCTAGGAGAAGTTCCTAATACAAAGGGAACTATTGGTGTTTATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATCCAAACCGGTACAATACGAGAAAATATTTTGTTTGGATCTGAGTTGGATGATCAAAGATATCAAGAAACACTTCAAAGATCTTCATTGGTAACGGACCTCGAGTTGCTTCCCTACGGTGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTAGCTCGGGCACTTTATGTGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCCGTTGATGCACATACTGCAAAAAGTTTATTTAATGAATACATCATGGAAGGACTCAAAGGGAAAACTGTCTTACTCGTGACTCATCAAGTTGACTTTCTCCCGGCATTTGATTTTGTTTTGTTGATGTCAGACGGGGTAATCCTACAAGCTGGTCCATATAACGAGCTATTGACCTCAAGCAAAGAATTCAATGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCAAACCAGCCTATGAATTTTACTTTAACACAAACTTCTAAAAAGGTTACACAAACTTTCGTCGAAAAGCAGATTATAGAAACAAATGGAAACCAATTGATTAAGCAAGAAGAAAGAGAGAAAGGAGATACAGGGTTGAAGCCTTACTTACAATATATGAATCAGATGAAAGGCTATATATTCTTCATTGTGGCTTCACTTGCACACCTTATTTTTGTGGTTTGTCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCGCGTCAGCACGTTGCGGTTGATTTTAGTTTATTTCCTAATTGGAGTTTCTTCAGCATTTTTCATGTTAACCAGAAGTCTCTTTATAGTTGCTTTAGGTCTTCAATCTTCAAAGTACTTATTTTTACGGTTGATGAACTCCCTCTTTCGCGCACCAATGTCTTTTTATGACTCTACACCATTAGGAAGGATACTAAGTAGGGTTTCATCTGATCTGAGCATGATGGATGTTGATATTCCATTTAGCGTTGCTTTTTCGGTGGGAGGAACTATGAATTTTTGCTCTAGTCTTGCTGTTTTAGCAGTTGTCACTTGGCAAGTATTGATTGTGGCTATACCAATGGTTTATGTTACAATTCGCTTGAAGGGATACTACATTGCCGCAGCAAAAGAAGTAATGCGGATGAATGGCACAACAAAATCTTACGTAGCTAATCATGTAGCTGAAACTGTTGCCGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTTGAGAAGAATCTTGATCTAATTGACATTAATGCTAGTGCATTTTTTCATAATTTTGCCTCAAATGAGTGGTTGATCCTACGGTTAGAAACAATAAGTGCAGGTCTTCTTGCCTCAGCAGCGCTATGCATGGTCATACTTCCACCAGGAACTTTCACCTCTGGATTCATTGGTATGGCTCTATCTTATGGCCTTACACTAAATTCTTCCTTGGTATATTCAATTCAAAGTCAATGCACTATTGCAAGTCAGATAATATCGGTAGAGAGGTTAAATCAATATATGCATATAGAAAGTGAGGCCGAAGAAATAGTAGAAGGAAATCGTCCTCCTACAAATTGGCCGGTTGCAGGCAAAGTAGAAATAAAAGACTTGAAGATACGATACAGGCCCGAAGGACCACTTGTACTTCATGGAATCACATGCATATTTGAAGCTGGTCACAAGATTGGTATTGTTGGCAGAACAGGCAGTGGGAAATCGACTCTTATCAGTGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATCATAGTTGATGGAATAGACATCTCATCTATCGGTCTTCATGATTTGAGGTCGCGTTTTGGGATTATACCTCAAGATCCTACCCTTTTTAATGGGACAGTAAGATATAACTTAGACCCTTTATCTCAACACACCGATAAAGAGATATGGGAGGTTCTCGGAAAGTGCCAATTGCGCGAAGTTGTCCAAGAGAAAGACGAGGGCTTAAACTCCTCAGTTGTTGAAGATGGATCGAACTGGAGCATGCGACAAAGGCAGTTATTCTGTTTGGGGCGTGCGCTTTTGCGAAGAAGTAGGATATTGGTGTTGGACGAAGCAACTGCTTCAATTGATAATTCTGCTGATATGATTCTGCAAAAAACCATTAGAACCGAGTTTGCGGATTGTACTGTGATCACAGTAGCACATAGGATACCGACCGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGCGGAGTATGACGAACCAATGAGCTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAGCTTGTGAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 4284 0.388 MLIMLSFMMFLKSSLRPFWSRVGYSNFQLVSAIINGSLGLLHLCLGIWVLEETLRKSHKAFPLNLWLVEFFHGLTWLFVSLTVSLRIKQPRKAWLWLFSILVFFASCTLCVLSMSYAIERRELSVKATLDVISFLGSTLLLLCTYKACNREDCDADRETVGRLYAPLNGEFNDVSESYVTPFAKAGLFSKISFWWLNPLIKKGQEKTLQDEDIPKLRESDRAESCYMSFVEQLRIQREKEPSSHSSVLWTIIMCHRREILITGFFALLKILAISCGPLLLNAFILVSEGNESFKYEGYVLAISLFFIKIIESLAQRQWYFRSRIVGMKVRSLLTANIYKKTLRLSNSARLIHSGGEIMNYMTVDAYRIGEFPFWFHQTWTTILQLCIALVILFRAIGLATIASMVVIVLTVLCNTPLAKLQHKFQSELMVAQDERLKASSEALVNMKVLKLYAWENNFKNAIEKLRNAELKLISAVQLSKAYLLFLFWTSPVLVSAASFLACYFLKVPLHASNVFTFVATLRLVQEPITGIPDVITVIIQAKVAFARISNFLEAPELQNANFKNKCFKDNHKGSSVLIKYADFSWEGNVSKPTLRNINLDVRRGLKVAICGEVGSGKSTLLATILGEVPNTKGTIGVYGKFAYVSQTAWIQTGTIRENILFGSELDDQRYQETLQRSSLVTDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYVNADIYLLDDPFSAVDAHTAKSLFNEYIMEGLKGKTVLLVTHQVDFLPAFDFVLLMSDGVILQAGPYNELLTSSKEFNDLVNAHKETAGSNQPMNFTLTQTSKKVTQTFVEKQIIETNGNQLIKQEEREKGDTGLKPYLQYMNQMKGYIFFIVASLAHLIFVVCQILQNSWMAANVDNPRVSTLRLILVYFLIGVSSAFFMLTRSLFIVALGLQSSKYLFLRLMNSLFRAPMSFYDSTPLGRILSRVSSDLSMMDVDIPFSVAFSVGGTMNFCSSLAVLAVVTWQVLIVAIPMVYVTIRLKGYYIAAAKEVMRMNGTTKSYVANHVAETVAGAVTIRAFEEEDRFFEKNLDLIDINASAFFHNFASNEWLILRLETISAGLLASAALCMVILPPGTFTSGFIGMALSYGLTLNSSLVYSIQSQCTIASQIISVERLNQYMHIESEAEEIVEGNRPPTNWPVAGKVEIKDLKIRYRPEGPLVLHGITCIFEAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDKEIWEVLGKCQLREVVQEKDEGLNSSVVEDGSNWSMRQRQLFCLGRALLRRSRILVLDEATASIDNSADMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLAEYDEPMSLMKREESLFRKLVKEYWSHFQSAESH 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00890 1427 SMART AAA_5 603 776 IPR003593 GO:0016887
Trre12g00890 1427 SMART AAA_5 1207 1390 IPR003593 GO:0016887
Trre12g00890 1427 CDD ABCC_MRP_domain1 576 775 - -
Trre12g00890 1427 Pfam ABC transporter 594 728 IPR003439 GO:0005524
Trre12g00890 1427 FunFam ABC transporter C family member 5 564 807 - -
Trre12g00890 1427 Gene3D ABC transporter type 1, transmembrane domain 247 549 IPR036640 GO:0005524|GO:0016020
Trre12g00890 1427 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 578 799 IPR003439 GO:0005524
Trre12g00890 1427 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 182 1415 - -
Trre12g00890 1427 Pfam ABC transporter transmembrane region 260 522 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00890 1427 Pfam ABC transporter transmembrane region 865 1124 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00890 1427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1171 1414 IPR027417 -
Trre12g00890 1427 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 260 540 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00890 1427 FunFam ABC transporter C family member 5 831 1162 - -
Trre12g00890 1427 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 868 1144 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00890 1427 Coils Coil 451 471 - -
Trre12g00890 1427 ProSitePatterns ABC transporters family signature. 701 715 IPR017871 GO:0005524|GO:0016887
Trre12g00890 1427 Gene3D - 1164 1416 IPR027417 -
Trre12g00890 1427 SUPERFAMILY ABC transporter transmembrane region 248 553 IPR036640 GO:0005524|GO:0016020
Trre12g00890 1427 CDD ABC_6TM_ABCC_D2 863 1156 IPR044726 GO:0140359
Trre12g00890 1427 CDD ABC_6TM_ABCC_D1 261 548 IPR044746 GO:0140359
Trre12g00890 1427 SUPERFAMILY ABC transporter transmembrane region 860 1161 IPR036640 GO:0005524|GO:0016020
Trre12g00890 1427 Gene3D ABC transporter type 1, transmembrane domain 829 1163 IPR036640 GO:0005524|GO:0016020
Trre12g00890 1427 Pfam ABC transporter 1198 1346 IPR003439 GO:0005524
Trre12g00890 1427 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1181 1415 IPR003439 GO:0005524
Trre12g00890 1427 CDD ABCC_MRP_domain2 1179 1399 - -
Trre12g00890 1427 FunFam ABC transporter C family member 3 1164 1416 - -
Trre12g00890 1427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 799 IPR027417 -
Trre12g00890 1427 FunFam ABC transporter C family member 10 243 556 - -
Trre12g00890 1427 Gene3D - 550 824 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00890 Trre-Chr12 8281271 8287082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00890 576 807 Calmodulin-binding Proteins AT2G36910 32.271 5.36e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00890 K05666 - gmx:100787314 2223.74