Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00889 ATGAAGGATTTTCGGAGCCTAATTTGCGGAGACTCGAGCTGTTCTGAGACTAGAGGAAATACTTTCTGTTATGATTTCAAGAGTTTGAAAGATCCTTCTTCATGCAATAACCATTTGTTGGTAATTTTCTTTGATCTGATCATGCTGATTATGCTGTCATTTATGATGTTCTTGAAGTCTTCTTTGAGACCCTTTTGGAGTCGAGTAGGATATTCAAACTTCCAGCTAGTTTCTGCCATAATCAATGGCTCTCTTGGGTTGTTGCATTTATGCTTAGGAATTTGGGTTTTAGAGGAAACATTAAGGAAATCTCACAAAGCATTTCCTCTTAACTTGTGGTTGGTAGAATTCTTTCATGGACTCACATGGTTGTTTGTAAGTTTAACTGTTAGTCTTCGGATAAAACAACCTCGAAAAGCATGGTTATGGCTGTTTTCTATTCTCGTGTTCTTTGCTTCTTGTACATTATGTGTTTTATCTATGTCTTATGCAATTGAAAGAAGAGAATTGTCTGTCAAGGCAACTTTAGATGTTATATCTTTTCTAGGATCAACTTTGCTTTTGTTATGTACTTATAAAGCATGTAATCGTGAAGATTGCGATGCAGACCGAGAAACTGTTGGAAGGCTTTATGCTCCCTTGAATGGAGAGTTCAATGATGTTTCTGAAAGTTATGTCACGCCATTTGCGAAAGCTGGATTATTTAGTAAGATATCATTTTGGTGGTTGAATCCATTGATTAAAAAGGGTCAAGAAAAAACACTTCAAGACGAGGATATTCCAAAGTTAAGAGAGTCTGACCGAGCAGAAAGTTGTTATATGTCATTTGTAGAACAGTTAAGGATACAAAGAGAAAAAGAACCATCATCACATTCATCGGTATTATGGACAATCATAATGTGCCACCGAAGAGAGATTTTGATAACGGGATTCTTTGCTTTGCTCAAGATACTTGCTATATCTTGCGGCCCTCTACTTCTGAATGCCTTTATATTGGTTTCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTCTTCTTCATAAAGATAATAGAATCCTTAGCACAACGACAATGGTATTTTCGCAGTAGAATTGTTGGAATGAAAGTTAGGTCACTACTTACGGCAAACATTTATAAAAAAACATTAAGGCTATCCAATTCTGCTAGATTGATTCACTCTGGTGGCGAGATAATGAATTATATGACAGTGGATGCGTATAGAATTGGAGAATTTCCATTCTGGTTTCACCAAACATGGACAACAATCCTCCAATTGTGTATTGCGTTAGTAATTCTTTTCCGAGCAATTGGACTCGCAACAATAGCTTCAATGGTTGTGATAGTTCTCACGGTGCTTTGCAACACTCCACTAGCAAAGTTACAACACAAGTTTCAGAGCGAACTTATGGTTGCACAAGATGAGAGATTGAAGGCTAGTTCTGAAGCACTTGTGAATATGAAAGTGCTAAAGCTATATGCATGGGAAAATAATTTTAAAAATGCTATAGAAAAGTTAAGAAATGCGGAACTTAAATTGATATCTGCAGTGCAATTAAGTAAGGCATACCTTCTCTTTCTCTTTTGGACCTCACCGGTGTTGGTGTCTGCTGCTTCTTTTCTAGCATGTTACTTCCTTAAAGTTCCTTTGCACGCAAGTAATGTTTTCACTTTTGTAGCAACTCTACGCCTTGTTCAAGAGCCAATTACAGGTATCCCGGATGTCATTACGGTGATCATTCAAGCAAAAGTTGCATTTGCACGGATTAGTAATTTCCTCGAGGCACCAGAACTACAGAATGCAAATTTCAAGAATAAGTGCTTTAAGGACAACCACAAAGGCTCATCAGTTTTAATAAAATATGCTGACTTTTCATGGGAAGGTAATGTATCAAAGCCAACACTAAGAAACATAAATTTGGACGTTAGACGCGGGCTAAAGGTGGCTATTTGCGGAGAAGTTGGCTCAGGAAAATCTACGCTTTTAGCAACAATTCTAGGAGAAGTTCCTAATACAAAGGGAACTATTGGTGTTTATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATCCAAACCGGTACAATACGAGAAAATATTTTGTTTGGATCTGAGTTGGATGATCAAAGATATCAAGAAACACTTCAAAGATCTTCATTGGTAACGGACCTCGAGTTGCTTCCCTACGGTGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTAGCTCGGGCACTTTATGTGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCCGTTGATGCACATACTGCAAAAAGTTTATTTAATGAATACATCATGGAAGGACTCAAAGGGAAAACTGTCTTACTCGTGACTCATCAAGTTGACTTTCTCCCGGCATTTGATTTTGTTTTGTTGATGTCAGACGGGGTAATCCTACAAGCTGGTCCATATAACGAGCTATTGACCTCAAGCAAAGAATTCAATGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCAAACCAGCCTATGAATTTTACTTTAACACAAACTTCTAAAAAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCGCGTCAGCACGTTGCGGTTGATTTTAGTTTATTTCCTAATTGGAGTTTCTTCAGCATTTTTCATGTTAACCAGAAGTCTCTTTATAGTTGCTTTAGGTCTTCAATCTTCAAAGTACTTATTTTTACGGTTGATGAACTCCCTCTTTCGCGCACCAATGTCTTTTTATGACTCTACACCATTAGGAAGGATACTAAGTAGGGTTTCATCTGATCTGAGCATGATGGATGTTGATATTCCATTTAGCGTTGCTTTTTCGGTGGGAGGAACTATGAATTTTTGCTCTAGTCTTGCTGTTTTAGCAGTTGTCACTTGGCAAGTATTGATTGTGGCTATACCAATGGTTTATGTTACAATTCGCTTGAAGGGATACTACATTGCCGCAGCAAAAGAAGTAATGCGGATGAATGGCACAACAAAATCTTACGTAGCTAATCATGTAGCTGAAACTGTTGCCGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTTGAGAAGAATCTTGATCTAATTGACATTAATGCTAGTGCATTTTTTCATAATTTTGCCTCAAATGAGTGGTTGATCCTACGGTTAGAAACAATAAGTGCAGGTCTTCTTGCCTCAGCAGCGCTATGCATGGTCATACTTCCACCAGGAACTTTCACCTCTGGATTCATTGGTATGGCTCTATCTTATGGCCTTACACTAAATTCTTCCTTGGTATATTCAATTCAAAGTCAATGCACTATTGCAAGTCAGATAATATCGGTAGAGAGGTTAAATCAATATATGCATATAGAAAGTGAGGCCGAAGAAATAGTAGAAGGAAATCGTCCTCCTACAAATTGGCCGGTTGCAGGCAAAGTAGAAATAAAAGACTTGAAGATACGATACAGGCCCGAAGGACCACTTGTACTTCATGGAATCACATGCATATTTGAAGCTGGTCACAAGATTGGTATTGTTGGCAGAACAGGCAGTGGGAAATCGACTCTTATCAGTGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATCATAGTTGATGGAATAGACATCTCATCTATCGGTCTTCATGATTTGAGGTCGCGTTTTGGGATTATACCTCAAGATCCTACCCTTTTTAATGGGACAGTAAGATATAACTTAGACCCTTTATCTCAACACACCGATAAAGAGATATGGGAGGTTCTCGGAAAGTGCCAATTGCGCGAAGTTGTCCAAGAGAAAGACGAGGGCTTAAACTCCTCAGTTGTTGAAGATGGATCGAACTGGAGCATGCGACAAAGGCAGTTATTCTGTTTGGGGCGTGCGCTTTTGCGAAGAAGTAGGATATTGGTGTTGGACGAAGCAACTGCTTCAATTGATAATTCTGCTGATATGATTCTGCAAAAAACCATTAGAACCGAGTTTGCGGATTGTACTGTGATCACAGTAGCACATAGGATACCGACCGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGCGGAGTATGACGAACCAATGAGCTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAGCTTGTGAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 4242 0.389 MKDFRSLICGDSSCSETRGNTFCYDFKSLKDPSSCNNHLLVIFFDLIMLIMLSFMMFLKSSLRPFWSRVGYSNFQLVSAIINGSLGLLHLCLGIWVLEETLRKSHKAFPLNLWLVEFFHGLTWLFVSLTVSLRIKQPRKAWLWLFSILVFFASCTLCVLSMSYAIERRELSVKATLDVISFLGSTLLLLCTYKACNREDCDADRETVGRLYAPLNGEFNDVSESYVTPFAKAGLFSKISFWWLNPLIKKGQEKTLQDEDIPKLRESDRAESCYMSFVEQLRIQREKEPSSHSSVLWTIIMCHRREILITGFFALLKILAISCGPLLLNAFILVSEGNESFKYEGYVLAISLFFIKIIESLAQRQWYFRSRIVGMKVRSLLTANIYKKTLRLSNSARLIHSGGEIMNYMTVDAYRIGEFPFWFHQTWTTILQLCIALVILFRAIGLATIASMVVIVLTVLCNTPLAKLQHKFQSELMVAQDERLKASSEALVNMKVLKLYAWENNFKNAIEKLRNAELKLISAVQLSKAYLLFLFWTSPVLVSAASFLACYFLKVPLHASNVFTFVATLRLVQEPITGIPDVITVIIQAKVAFARISNFLEAPELQNANFKNKCFKDNHKGSSVLIKYADFSWEGNVSKPTLRNINLDVRRGLKVAICGEVGSGKSTLLATILGEVPNTKGTIGVYGKFAYVSQTAWIQTGTIRENILFGSELDDQRYQETLQRSSLVTDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYVNADIYLLDDPFSAVDAHTAKSLFNEYIMEGLKGKTVLLVTHQVDFLPAFDFVLLMSDGVILQAGPYNELLTSSKEFNDLVNAHKETAGSNQPMNFTLTQTSKKILQNSWMAANVDNPRVSTLRLILVYFLIGVSSAFFMLTRSLFIVALGLQSSKYLFLRLMNSLFRAPMSFYDSTPLGRILSRVSSDLSMMDVDIPFSVAFSVGGTMNFCSSLAVLAVVTWQVLIVAIPMVYVTIRLKGYYIAAAKEVMRMNGTTKSYVANHVAETVAGAVTIRAFEEEDRFFEKNLDLIDINASAFFHNFASNEWLILRLETISAGLLASAALCMVILPPGTFTSGFIGMALSYGLTLNSSLVYSIQSQCTIASQIISVERLNQYMHIESEAEEIVEGNRPPTNWPVAGKVEIKDLKIRYRPEGPLVLHGITCIFEAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDKEIWEVLGKCQLREVVQEKDEGLNSSVVEDGSNWSMRQRQLFCLGRALLRRSRILVLDEATASIDNSADMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLAEYDEPMSLMKREESLFRKLVKEYWSHFQSAESH 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00889 1413 SUPERFAMILY ABC transporter transmembrane region 869 1147 IPR036640 GO:0005524|GO:0016020
Trre12g00889 1413 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00889 1413 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1167 1401 IPR003439 GO:0005524
Trre12g00889 1413 Coils Coil 498 518 - -
Trre12g00889 1413 FunFam ABC transporter C family member 5 611 854 - -
Trre12g00889 1413 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 859 1401 - -
Trre12g00889 1413 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Trre12g00889 1413 SMART AAA_5 1193 1376 IPR003593 GO:0016887
Trre12g00889 1413 SMART AAA_5 650 823 IPR003593 GO:0016887
Trre12g00889 1413 FunFam ABC transporter C family member 5 835 1148 - -
Trre12g00889 1413 FunFam ABC transporter C family member 10 290 603 - -
Trre12g00889 1413 Gene3D - 1150 1402 IPR027417 -
Trre12g00889 1413 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 846 IPR003439 GO:0005524
Trre12g00889 1413 Gene3D - 619 852 IPR027417 -
Trre12g00889 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1157 1400 IPR027417 -
Trre12g00889 1413 CDD ABCC_MRP_domain2 1165 1385 - -
Trre12g00889 1413 Pfam ABC transporter 1184 1332 IPR003439 GO:0005524
Trre12g00889 1413 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 866 1130 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00889 1413 Gene3D ABC transporter type 1, transmembrane domain 855 1149 IPR036640 GO:0005524|GO:0016020
Trre12g00889 1413 Gene3D ABC transporter type 1, transmembrane domain 278 604 IPR036640 GO:0005524|GO:0016020
Trre12g00889 1413 FunFam ABC transporter C family member 3 1150 1402 - -
Trre12g00889 1413 SUPERFAMILY ABC transporter transmembrane region 295 600 IPR036640 GO:0005524|GO:0016020
Trre12g00889 1413 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524|GO:0016887
Trre12g00889 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 846 IPR027417 -
Trre12g00889 1413 CDD ABC_6TM_ABCC_D2 873 1142 IPR044726 GO:0140359
Trre12g00889 1413 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Trre12g00889 1413 Pfam ABC transporter transmembrane region 307 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00889 1413 Pfam ABC transporter transmembrane region 876 1110 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00889 1413 CDD ABCC_MRP_domain1 623 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00889 Trre-Chr12 8281271 8287223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00889 623 877 Calmodulin-binding Proteins AT2G36910 29.927 5.19e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00889 K05666 - gmx:100787314 2068.51