Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00888 ATGGAAGATTATTGGAACATGATTTGTGGAGACTCTAGTTATGATTTCAAGTTTCTGAAAGACCCTTCTTCATGCATTAATCATTTGTTTCACATTTTCTTTGATTTGTTCATGTTAATGATACTTTTAATCATCATGTTCCGAAAGTTTTCCTCGAGACCTGTTTGTGGTCTAGTAAGATATTCAAACTTGCAGCTAGTTTCTGCCATAACCAATGGCTCTCTTGGATTGTTGCATTTATGCATAGGAATTTGGGTTTTAGAGGAAACATTAAGGAAAAATCACAAAGCCTTTCCTCTTAACTTGTGGTTGCTAGAACTCTTTCATGGCCTCACATGGTTGTTTGTAACTTGTGCTGCAAGTCTTCATATAAAACAACTCTCAAGAGCATGGATATGGTTATTATCCATTCTCATCAGTTTTGTTGCTGGTGTATTATGTTTTTTATCCATATCCTATGCAATTGGTAGCAGAGAATTATCCCTCAAGGCAAGTTTAGATATCATATCTTTTTTAGGAGCATCTTTGCTGCTGTTATGTACTTACAAAACATGTAAACACGATGATGCTCGCGGAGACACATTCGATAGCCAGTTAACCCCATTTGCTAAAGCTGGATTCTTTAGTAAGATGTCGTTTTGGTGGTTGAATCCGTTGATGAAAAAAGGTCAAGAAAAAATACTTCAAGATGAGGATATTCCAAAGTTAAGAGTGTCCGAACGAGCAGAAAGTTGTTATTTGTCATTTGTAGAGCAATCAAGGAAACAAAGAGGAAAAGAACCATCATCACATTCAACAATTTTTTGGACAATAGTTTCATGCCACCAAAGAGAGATTTTGATAACAGGATTGTTTGCTTTGCTTAAGGTACTTGCTATATCTTGCGGCCCTCTACTTCTAAATGCCTTTATACTGGTTTCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTCCTCTTCATAAAGATCATAGAATCCTTAGCACAAAGACAATGGTATTTCCGAAGTAGGGTTGTTGGGATGAAAGTTAGATCGCTACTTACCGCAAAAATTTATAAAAAGATGTTAAGGCTATCCAATTCTGCTAGATTGATTCACTCTAGCGGCGAGATAATGAATTACATGACAGTGGATGCTTATAGAATTGGAGAATTTCCGTATTGGTTTCATAGGACTTGGACAACAATTCTCCAATTGTCTATTGCTTTAATAATTCTTTTCCGCGCAATTGGACTAGCAACACTAGCATCATTACCGGTGCTAGTTCTAACCGTGTTTTGCAATGCTCCACTGTCAAAGCTGCATCACAAGTTTCATTGCAAGCTTATGGGGGCACAAGATCAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAAGTTCTAAAGCTATATGCATGGGAAACTCATTTTAAAAATGCAATAGAAAAGTTACGAAATGTGGAACTGAAATTGCTATCTGCGGTACTATTAAGAAAGACTTATGTTGTCTTTCTCTTTTGGACCTCGCCAGTTATGGTATCTGCTGCTTCTTTCCTAGCATGTTACTTGCTGAAGATTCCTTTGCATGCAAGTAATGTTTTCACATTTGTAGCAACTTTACGCCTTGTTCAAGAGCTTATTACAGGCATCCCGGATGTTATTGCGGTAATCATTCAAGCAAAAGTTTCATTTGCTCGAATTGGTAACTTTCTCGAGACACCAGAACTGCATAGTTCAAATTTCAATAATAGGGGCATTGATGACAACCTCAAAGGCTCAGTTTTAATAAAATCAGGTGACTTTTCATGGGAAGGTAATGCATCAAAGGCAACACTACGGAGCATAAATTTAGAGGTTAGACATGGCCAAAAAGTTGCTATTTGTGGAGAAGTTGGATCAGGAAAATCAACCCTCTTAGCAACAATTCTTGGAGAAGTTCCGAATACAAAGGGAACAATTGATGTTCATGGGAAGTTTGCATATGTTTCTCAAACAGCGTGGATACAAACAGGTACAATACGGGAAAATATTTTGTTTGGATCCGAGTTCGATGATCAAAGATATCAAGAAACACTTCAAAGGTCTTCACTGATAAAGGACCTTGAGTTGCTTCCCTACGGTGACCTCACCGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAACAGCGAATTCAACTAGCCCGAGCTCTTTATGAAAATGCTGATTTATATCTCTTGGACGATCCATTCAGTGCCGTTGATGCACAAACTGCAAAAAGTTTGTTTCATGAATACATCATGGAAGGACTCAAAGGAAAAACTGTCTTACTCGTGACTCATCAAGTTGACTTTCTCCCAGCATTTGATACGGTTTTGTTAATGTCAGATGGTGTAATCCTAAAAGCTGGTCCGTATCACCACCTAATGACCGAAAGCAAACAATTCCAAGACCTTGTCAATGCTCACAAGGTTACTGCCGGTTCAAACCAGCTCGTGAATGTTGCTTTATCTCAAGCTTCTAGAAATATTACTCAATCTTTTGTGAAAAAGCAGTGTGAAGAAACAAAGGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGATAGGAGACACAGGGTTCAAGCCTTACTTACAATATCTGAATAAAATGAAAGGCTATATTTTCTTCTCCGTGGCTACATTCTGTCACATTGTTTTTGTGGTTTCTCAGATACTACAAAACACGTGGATGGCTGCTAATGTCGACAATCGCCATGTCACCACGTTGCAGTTGGTTTTAGTTTATTTCTGGATTGGACTTTCTTCAATATTTTTCATGGTGATCAGAAGTCTACTCGTAGTTTCATTGGGTCTTCATTCTTCAAAATACTTATTTTTACAATTGATGAACTCTCTCTTTCGAGCACCGCTGTCTTTTTACGACTCTACGCCATTAGGAAGGATACTAAGTAGGGTTTCATCTGATCTGAGCATTATGGATCTTGACATGCCATTTAGCCTAATTTTTTCCGTCGGATCCGCTATAAACTTTTATGCTTGTCTTATAGTTTTATCAATTGTCACTTGGCAAGTGTTGATTGTGGTTATACCAATGGTATATGCTACAATTTGTTTACAGAAATACTACTTAGTCTCGGAAAAACAAATGATGCGGATGAATGGCACAACAAAATCCTATTTAGCTAATCATGTAGCTGAAACTGTTGCTGGCGCCATTACAATAAGGGCATTTGAGGAAGAAGATCGTTTTTTTAAGAAGAATCTTGATCTAATTGATATGAATGCTAGTACATTTTTCCACTGTTTTGCGTCAAATGAATGGTTGACGCAGCGACTAGAAACAATAAGCGCACTTGTTCTTTCCTCTGCAGCACTTTGCATGGTTATACTTCCACCAGGGACTTTCACCTCCGGATTTATCGGTCTTGCTCTATCATATGGCCTTTCACTAAACGCTTCCTTAGTATTTTCAATTGGAATTCAATGCCGTCTCGCAGATAATATAATATCAGTAGAGAGGCTAAATCAATATATGCATATACAAAGTGAGGCAAAAGAAATAATAGAAGGTAATCGTCCTCCTTTGAATTGGCCAGTTGCAGGAAAAGTCGAAATAAATGACTTGAAGATACGATACAGACCCGATGGACCACTTGTACTACATGGGATCACATGCACATTTGAAGCTGGTCACAAGATTGGTATTGTTGGAAGAACAGGCTGTGGGAAATCCACTCTTATTGGTGCTTTATTTCGTCTTGTGGAACCAGAAGGAGGAAAAGTTGTAGTTGACGGAATAGACATCTCAACTATTGGTCTTCATGATTTGAGGTCGCGTTTTGGGATTATACCTCAGGATCCTACCCTTTTTAATGGAACAGTGAGATTTAATATGGACCCTTTATCTCAACACACCGATCAAGAGATATGGGAGGTTCTCGGGAAATGCCAACTTCGAGAAGTTGTCCAAAAGAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGACGATGGATCAAACTGGAGCATGGGACAAAGGCAGTTATTCTGTTTAGGGCGCGCTCTTTTAAGGAGAAGTAGGATATTGGTACTGGATGAAGCAACTGCATCGATCGACAACTCAACTGATTTGGTTCTACAGAAAACCATTAGAACCGAGTTTGCGGATTGTACAGTGATCACAGTAGCACACAGGATACCGACTGTGATGGATTGTACTATGGTTCTCTCGATCAATGATGGAAAATTGGCGGAGTATGATGAACCGATGAGCTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAGCTTGTCAACGAATACTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 4341 0.3852 MEDYWNMICGDSSYDFKFLKDPSSCINHLFHIFFDLFMLMILLIIMFRKFSSRPVCGLVRYSNLQLVSAITNGSLGLLHLCIGIWVLEETLRKNHKAFPLNLWLLELFHGLTWLFVTCAASLHIKQLSRAWIWLLSILISFVAGVLCFLSISYAIGSRELSLKASLDIISFLGASLLLLCTYKTCKHDDARGDTFDSQLTPFAKAGFFSKMSFWWLNPLMKKGQEKILQDEDIPKLRVSERAESCYLSFVEQSRKQRGKEPSSHSTIFWTIVSCHQREILITGLFALLKVLAISCGPLLLNAFILVSEGNESFKYEGYVLAISLLFIKIIESLAQRQWYFRSRVVGMKVRSLLTAKIYKKMLRLSNSARLIHSSGEIMNYMTVDAYRIGEFPYWFHRTWTTILQLSIALIILFRAIGLATLASLPVLVLTVFCNAPLSKLHHKFHCKLMGAQDQRLKASSEALVNMKVLKLYAWETHFKNAIEKLRNVELKLLSAVLLRKTYVVFLFWTSPVMVSAASFLACYLLKIPLHASNVFTFVATLRLVQELITGIPDVIAVIIQAKVSFARIGNFLETPELHSSNFNNRGIDDNLKGSVLIKSGDFSWEGNASKATLRSINLEVRHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIDVHGKFAYVSQTAWIQTGTIRENILFGSEFDDQRYQETLQRSSLIKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYENADLYLLDDPFSAVDAQTAKSLFHEYIMEGLKGKTVLLVTHQVDFLPAFDTVLLMSDGVILKAGPYHHLMTESKQFQDLVNAHKVTAGSNQLVNVALSQASRNITQSFVKKQCEETKGNQLIKQEEREIGDTGFKPYLQYLNKMKGYIFFSVATFCHIVFVVSQILQNTWMAANVDNRHVTTLQLVLVYFWIGLSSIFFMVIRSLLVVSLGLHSSKYLFLQLMNSLFRAPLSFYDSTPLGRILSRVSSDLSIMDLDMPFSLIFSVGSAINFYACLIVLSIVTWQVLIVVIPMVYATICLQKYYLVSEKQMMRMNGTTKSYLANHVAETVAGAITIRAFEEEDRFFKKNLDLIDMNASTFFHCFASNEWLTQRLETISALVLSSAALCMVILPPGTFTSGFIGLALSYGLSLNASLVFSIGIQCRLADNIISVERLNQYMHIQSEAKEIIEGNRPPLNWPVAGKVEINDLKIRYRPDGPLVLHGITCTFEAGHKIGIVGRTGCGKSTLIGALFRLVEPEGGKVVVDGIDISTIGLHDLRSRFGIIPQDPTLFNGTVRFNMDPLSQHTDQEIWEVLGKCQLREVVQKKEEGLNSSVVDDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLVLQKTIRTEFADCTVITVAHRIPTVMDCTMVLSINDGKLAEYDEPMSLMKREESLFRKLVNEYWSHFQSAESH 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00888 1446 Pfam ABC transporter transmembrane region 280 539 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00888 1446 Pfam ABC transporter transmembrane region 886 1123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00888 1446 CDD ABC_6TM_ABCC_D1 281 568 IPR044746 GO:0140359
Trre12g00888 1446 SMART AAA_5 1226 1409 IPR003593 GO:0016887
Trre12g00888 1446 SMART AAA_5 622 795 IPR003593 GO:0016887
Trre12g00888 1446 FunFam ABC transporter C family member 3 1183 1435 - -
Trre12g00888 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 590 818 IPR027417 -
Trre12g00888 1446 Gene3D - 1184 1436 IPR027417 -
Trre12g00888 1446 CDD ABCC_MRP_domain2 1198 1418 - -
Trre12g00888 1446 FunFam ABC transporter C family member 5 584 826 - -
Trre12g00888 1446 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 888 1163 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00888 1446 Gene3D - 575 838 IPR027417 -
Trre12g00888 1446 FunFam ABC transporter C family member 5 849 1181 - -
Trre12g00888 1446 CDD ABCC_MRP_domain1 595 794 - -
Trre12g00888 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1200 1434 IPR003439 GO:0005524
Trre12g00888 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 818 IPR003439 GO:0005524
Trre12g00888 1446 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 202 1434 - -
Trre12g00888 1446 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 280 560 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00888 1446 Gene3D ABC transporter type 1, transmembrane domain 848 1182 IPR036640 GO:0005524|GO:0016020
Trre12g00888 1446 Gene3D ABC transporter type 1, transmembrane domain 250 574 IPR036640 GO:0005524|GO:0016020
Trre12g00888 1446 CDD ABC_6TM_ABCC_D2 886 1175 IPR044726 GO:0140359
Trre12g00888 1446 FunFam ABC transporter C family member 10 263 576 - -
Trre12g00888 1446 Pfam ABC transporter 613 747 IPR003439 GO:0005524
Trre12g00888 1446 SUPERFAMILY ABC transporter transmembrane region 268 573 IPR036640 GO:0005524|GO:0016020
Trre12g00888 1446 Pfam ABC transporter 1217 1365 IPR003439 GO:0005524
Trre12g00888 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1190 1434 IPR027417 -
Trre12g00888 1446 SUPERFAMILY ABC transporter transmembrane region 873 1180 IPR036640 GO:0005524|GO:0016020
Trre12g00888 1446 ProSitePatterns ABC transporters family signature. 720 734 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00888 Trre-Chr12 8259903 8265652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00888 589 843 Calmodulin-binding Proteins AT2G36910 31.900 4.80e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00888 K05666 - gmx:100787314 2173.67