Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00883 ATGTTATGTTCTGAATTAGTTCAAGGATATATGCAATTTCAAGCAGAGGCCAAACTTTTTGATGTAGTTCATCATAAATACTTGATTGGTCTTATAGGGTATTGTGATGATGATACAAACATGGCTCTCGTCTATGAGTATATGGCTAATGGAGCTAGACTTAGCCAAACACTTATCAGCAAAAACATAAAAGATATGGTAGCCTTTTTCCTTCAAGCTGGAGCTGATTAA 231 0.3506 MLCSELVQGYMQFQAEAKLFDVVHHKYLIGLIGYCDDDTNMALVYEYMANGARLSQTLISKNIKDMVAFFLQAGAD 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00883 76 Gene3D Phosphorylase Kinase; domain 1 1 49 - -
Trre12g00883 76 Pfam Protein tyrosine and serine/threonine kinase 11 67 IPR001245 GO:0004672|GO:0006468
Trre12g00883 76 SUPERFAMILY Protein kinase-like (PK-like) 7 52 IPR011009 -
Trre12g00883 76 PANTHER OS07G0107800 PROTEIN-RELATED 6 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00883 Trre-Chr12 8070777 8071313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00883 1 51 Receptor kinase-like Gene Family AT1G51860 58.824 8.69e-18 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre12g00883 PK_Tyr_Ser-Thr 3.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00883 - - mtr:11427151 88.5817