Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00882 ATGTTATCTTCTGAATTAGTTCAAGGATATATGCAATTTCAAGCAGAGGCCAAACTTTTTGATGTAGTTCATCATAAATACTTGATTGGTCTTATAGGATATTGTGATGATGATACCAACATGGCTCTCATCTATGAGTATATGGCTAATGGAGACTTAGCCAAACACTTATTAGATAAAAGTGAACATATATTGATTTTGAATCAACGACTTCAAATTGCGGATGATGCTGCAGAAGGTTACTTCTACAAGAACTTTACTAAGGGGGAGCAATTTTGTGGTTACACTCCTCAGCATTTTGCTATGAACACATTTCCTAGAGATATATTTGACATGGGTGAGAAATCAGATTTAATGGTTCAAGAAGCTTATCAAAGTGATCCTTTTGATGGTGAACTCAATTGGATTAGGGAAGATATACCTGCCGCAATTATTGAGAAGTCTTCAGTTGTTATGGAAGAAACAAGAAATGAAGATTCTGATTTTGACTAG 492 0.3476 MLSSELVQGYMQFQAEAKLFDVVHHKYLIGLIGYCDDDTNMALIYEYMANGDLAKHLLDKSEHILILNQRLQIADDAAEGYFYKNFTKGEQFCGYTPQHFAMNTFPRDIFDMGEKSDLMVQEAYQSDPFDGELNWIREDIPAAIIEKSSVVMEETRNEDSDFD 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00882 163 Pfam Protein tyrosine and serine/threonine kinase 11 83 IPR001245 GO:0004672|GO:0006468
Trre12g00882 163 Gene3D Transferase(Phosphotransferase) domain 1 1 83 - -
Trre12g00882 163 SUPERFAMILY Protein kinase-like (PK-like) 8 82 IPR011009 -
Trre12g00882 163 PANTHER OS07G0107800 PROTEIN-RELATED 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00882 Trre-Chr12 8058949 8064228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00882 1 83 Receptor kinase-like Gene Family AT1G51860 52.381 3.26e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre12g00882 PK_Tyr_Ser-Thr 3.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00882 - - mtr:11427151 129.798