Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00875 ATGTGGTTTTTTTCTATGCTTATATTCTTTGTTTCTGGTATATTATTTGCTTTATCTATATCTTATGCAATTCAAAGTAAAGAATTGTCACTCAAAGTAGCTTTGGATATTATATCATTTCTAGGAGCAACTTTGTTACTATTGTGCACATACAAATCATGTAAATGTAAAGATAGTGATATAGAAATTGATGATAGTCTTTGTACTCCTTTGAATGGTGAGTCCGATGAAAATAATCTTCCGAGCCATGTTACTCCGTTTGCCGAGGCTGGATTCTTTAATAAGATTTGGTTTTGGTGGTTGAATCCGTTGATGAAAACGAGTCAAGAGAAAACACTTCAAGACGAGGATATTCCAAACTTGAGAGAGTCTGACCGAGCAGAAATTTGTTATGTTTCGTTTATGGAACAGTTAAACAGACAACGACAATGTGAACCATCGTCTCAGTCATCAGTTTTATGGACAATTGTTTCGTGCCACCGAAGTGAGATCTTTGTAACCGGATTCTTTGCTTTGCTTAAGGTACTCGCTATATCTACAACTCCTTTACTTCTGAATGCGTTTATATTGGTTGCTGAGGGTAATGAAAGTTTTGAATATGAAGGTTACATATTGTCGGTATCACTCTTCCTTATAAAAATCATAGAATCACTATCACAAAGACAATGGTATTTCCGCTGTAGACTTGTTGGTATGAAAGTTAGATCACTACTTAATGCAGCGATTTATAAAAAAAAATTAAGGCTATCCAATTCTGCGAGAATGATTCATTCTGGTGGCGAGATAATGAATTATATGATCGTGGATGCGTATAGAATTGGAGAATTTCCATTCTGGTTTCACCAAACATGGACAACAATCCTCCATTTGTGTATTGCATTAGTAATTCTTTTCCGCACAATTGGATTAGCGACACTAGCATCATTGGCGGTGATAGTTCTTAATGTGATTTGCAATTATCCATTAGCAAAGTTACAGCACAAGTATCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTAAAGGCTAGTTCTGAAGCTCTTGTGAATATGAAAGTGTTGAAGTTGTATGCTTGGGAAAAACATTTTAAAAATGTCGCCTCGCCGATGTTGGTGTCCACTGCTTCTTTTCTAGCATGTTACTTGTTGAACGTTCCTTTGAATGCAAGTAATGTTTTCACTTTCGTGGCAACTTTGCGTCTTGTTCAAGAGCCAATTACAAGTATCCCGGATGTTATTGCGGTGGTCATTCAGGCAAAAGTTGCATTTGCTCGAATTGTTAGTTTCCTTGATGCACCAGAACTGCAGGGTGAAAAATCGAAGAACAGGTGCTTCGATGACAACCTCAAAGGCTCAATTTCAATAAAATCTGCTAACTTTTCATGGGAAGGTAATGCATCAAAGGCAACACTAAGGAGCATAAATTTAGAGGTTCAACACGGCCAAAAAGTGGCTATTTATGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTAGCAACAATTCTCGGAGAAGTTCCTAAAACAAAGGGAAATATTGATGTTTATGGGAGATTTGCATATGTTTCTCAAACAGCGTGGATACAAACAGGTACAATACGGGACAATATTTTGTTCGGATCTGAATTGGATGATCAAAGATACCAAGAAACACTTCAAAGGTCTTCACTGATAAAGGACTTTGAGTTGCTTCCCTATGGTGACCTCACTGAAATAGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTTGGTCGAGCTCTTTATCAGAATGCTGATATATATCTATTGGATGATCCATTTAGTGCTGTCGATGCGCATACTGCAAAAAATTTGTTTAATGAATATATCATGGAAGGACTCAAAGGGAAAACAGTCTTACTTGTGACTCATCAAGTCGACTTTCTCCCAGCATTTGATTCGGTTTTGTTGATGTCAGACGGGGTAATCTTACAAGCTGGTCCATATAACGAGCTATTGATCTCAAGCGAAGAATTCAATGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTAACCAGCAGCTTGTCGATGTTACTTCTTCTCAGCGATATTCATCTACTCGAAAGGTTATGTTGGAACAAAGTGGGTCTGACATGAACCTCTAA 2142 0.3796 MWFFSMLIFFVSGILFALSISYAIQSKELSLKVALDIISFLGATLLLLCTYKSCKCKDSDIEIDDSLCTPLNGESDENNLPSHVTPFAEAGFFNKIWFWWLNPLMKTSQEKTLQDEDIPNLRESDRAEICYVSFMEQLNRQRQCEPSSQSSVLWTIVSCHRSEIFVTGFFALLKVLAISTTPLLLNAFILVAEGNESFEYEGYILSVSLFLIKIIESLSQRQWYFRCRLVGMKVRSLLNAAIYKKKLRLSNSARMIHSGGEIMNYMIVDAYRIGEFPFWFHQTWTTILHLCIALVILFRTIGLATLASLAVIVLNVICNYPLAKLQHKYQSKLMVAQDERLKASSEALVNMKVLKLYAWEKHFKNVASPMLVSTASFLACYLLNVPLNASNVFTFVATLRLVQEPITSIPDVIAVVIQAKVAFARIVSFLDAPELQGEKSKNRCFDDNLKGSISIKSANFSWEGNASKATLRSINLEVQHGQKVAIYGEVGSGKSTLLATILGEVPKTKGNIDVYGRFAYVSQTAWIQTGTIRDNILFGSELDDQRYQETLQRSSLIKDFELLPYGDLTEIGERGVNLSGGQKQRIQLGRALYQNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSVLLMSDGVILQAGPYNELLISSEEFNDLVNAHKETAGSNQQLVDVTSSQRYSSTRKVMLEQSGSDMNL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00875 713 SMART AAA_5 480 653 IPR003593 GO:0016887
Trre12g00875 713 SUPERFAMILY ABC transporter transmembrane region 153 433 IPR036640 GO:0005524|GO:0016020
Trre12g00875 713 Gene3D - 428 700 IPR027417 -
Trre12g00875 713 Pfam ABC transporter 471 605 IPR003439 GO:0005524
Trre12g00875 713 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 165 365 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00875 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 676 IPR027417 -
Trre12g00875 713 ProSitePatterns ABC transporters family signature. 578 592 IPR017871 GO:0005524|GO:0016887
Trre12g00875 713 Pfam ABC transporter transmembrane region 165 365 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00875 713 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 88 690 - -
Trre12g00875 713 CDD ABC_6TM_ABCC_D1 166 426 IPR044746 GO:0140359
Trre12g00875 713 CDD ABCC_MRP_domain1 453 652 - -
Trre12g00875 713 Gene3D ABC transporter type 1, transmembrane domain 152 427 IPR036640 GO:0005524|GO:0016020
Trre12g00875 713 FunFam ABC transporter C family member 5 442 684 - -
Trre12g00875 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 455 676 IPR003439 GO:0005524
Trre12g00875 713 FunFam ABC transporter C family member 10 148 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00875 Trre-Chr12 7976927 7979437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00875 447 700 Calmodulin-binding Proteins AT2G36910 31.868 1.66e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00875 K05666 - gmx:100787314 1037.33