Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00874 ATGTGGTTTTTTTCTATGCTTATATTCTTTGTTTCTGGTATATTATTTGCTTTATCTATATCTTATGCAATTCAAAGTAAAGAATTGTCACTCAAAGTAGCTTTGGATATTATATCATTTCTAGGAGCAACTTTGTTACTATTGTGCACATACAAATCATGTAAATGTAAAGATAGTGATATAGAAATTGATGATAGTCTTTGTACTCCTTTGAATGGTGAGTCCGATGAAAATAATCTTCCGAGCCATGTTACTCCGTTTGCCGAGGCTGGATTCTTTAATAAGATTTGGTTTTGGTGGTTGAATCCGTTGATGAAAACGAGTCAAGAGAAAACACTTCAAGACGAGGATATTCCAAACTTGAGAGAGTCTGACCGAGCAGAAATTTGTTATGTTTCGTTTATGGAACAGTTAAACAGACAACGACAATGTGAACCATCGTCTCAGTCATCAGTTTTATGGACAATTGTTTCGTGCCACCGAAGTGAGATCTTTGTAACCGGATTCTTTGCTTTGCTTAAGGTACTCGCTATATCTACAACTCCTTTACTTCTGAATGCGTTTATATTGGTTGCTGAGGGTAATGAAAGTTTTGAATATGAAGGTTACATATTGTCGGTATCACTCTTCCTTATAAAAATCATAGAATCACTATCACAAAGACAATGGTATTTCCGCTGTAGACTTGTTGGTATGAAAGTTAGATCACTACTTAATGCAGCGATTTATAAAAAAAAATTAAGGCTATCCAATTCTGCGAGAATGATTCATTCTGGTGGCGAGATAATGAATTATATGATCGTGGATGCGTATAGAATTGGAGAATTTCCATTCTGGTTTCACCAAACATGGACAACAATCCTCCATTTGTGTATTGCATTAGTAATTCTTTTCCGCACAATTGGATTAGCGACACTAGCATCATTGGCGGTGATAGTTCTTAATGTGATTTGCAATTATCCATTAGCAAAGTTACAGCACAAGTATCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTAAAGGCTAGTTCTGAAGCTCTTGTGAATATGAAAGCCTCGCCGATGTTGGTGTCCACTGCTTCTTTTCTAGCATGTTACTTGTTGAACGTTCCTTTGAATGCAAGTAATGTTTTCACTTTCGTGGCAACTTTGCGTCTTGTTCAAGAGCCAATTACAAGTATCCCGGATGTTATTGCGGTGGTCATTCAGGCAAAAGTTGCATTTGCTCGAATTGTTAGTTTCCTTGATGCACCAGAACTGCAGGGTGAAAAATCGAAGAACAGGTGCTTCGATGACAACCTCAAAGGCTCAATTTCAATAAAATCTGCTAACTTTTCATGGGAAGGTAATGCATCAAAGGCAACACTAAGGAGCATAAATTTAGAGGTTCAACACGGCCAAAAAGTGGCTATTTATGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTAGCAACAATTCTCGGAGAAGTTCCTAAAACAAAGGGAAATATTGATGTTTATGGGAGATTTGCATATGTTTCTCAAACAGCGTGGATACAAACAGGTACAATACGGGACAATATTTTGTTCGGATCTGAATTGGATGATCAAAGATACCAAGAAACACTTCAAAGGTCTTCACTGATAAAGGACTTTGAGTTGCTTCCCTATGGTGACCTCACTGAAATAGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTTGGTCGAGCTCTTTATCAGAATGCTGATATATATCTATTGGATGATCCATTTAGTGCTGTCGATGCGCATACTGCAAAAAATTTGTTTAATGAATATATCATGGAAGGACTCAAAGGGAAAACAGTCTTACTTGTGACTCATCAAGTCGACTTTCTCCCAGCATTTGATTCGGTTTTGTTGATGTCAGACGGGGTAATCTTACAAGCTGGTCCATATAACGAGCTATTGATCTCAAGCGAAGAATTCAATGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTAACCAGCAGCTTGTCGATGTTACTTCTTCTCAGCGATATTCATCTACTCGAAAGGTTATGTTGGAACAAAGTGGGTCTGACATGAACCTCTAA 2100 0.381 MWFFSMLIFFVSGILFALSISYAIQSKELSLKVALDIISFLGATLLLLCTYKSCKCKDSDIEIDDSLCTPLNGESDENNLPSHVTPFAEAGFFNKIWFWWLNPLMKTSQEKTLQDEDIPNLRESDRAEICYVSFMEQLNRQRQCEPSSQSSVLWTIVSCHRSEIFVTGFFALLKVLAISTTPLLLNAFILVAEGNESFEYEGYILSVSLFLIKIIESLSQRQWYFRCRLVGMKVRSLLNAAIYKKKLRLSNSARMIHSGGEIMNYMIVDAYRIGEFPFWFHQTWTTILHLCIALVILFRTIGLATLASLAVIVLNVICNYPLAKLQHKYQSKLMVAQDERLKASSEALVNMKASPMLVSTASFLACYLLNVPLNASNVFTFVATLRLVQEPITSIPDVIAVVIQAKVAFARIVSFLDAPELQGEKSKNRCFDDNLKGSISIKSANFSWEGNASKATLRSINLEVQHGQKVAIYGEVGSGKSTLLATILGEVPKTKGNIDVYGRFAYVSQTAWIQTGTIRDNILFGSELDDQRYQETLQRSSLIKDFELLPYGDLTEIGERGVNLSGGQKQRIQLGRALYQNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSVLLMSDGVILQAGPYNELLISSEEFNDLVNAHKETAGSNQQLVDVTSSQRYSSTRKVMLEQSGSDMNL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00874 699 CDD ABC_6TM_ABCC_D1 166 412 IPR044746 GO:0140359
Trre12g00874 699 Gene3D - 414 686 IPR027417 -
Trre12g00874 699 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 165 352 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00874 699 CDD ABCC_MRP_domain1 439 638 - -
Trre12g00874 699 FunFam ABC transporter C family member 10 148 353 - -
Trre12g00874 699 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 353 676 - -
Trre12g00874 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 662 IPR027417 -
Trre12g00874 699 Gene3D ABC transporter type 1, transmembrane domain 149 353 IPR036640 GO:0005524|GO:0016020
Trre12g00874 699 Gene3D ABC transporter type 1, transmembrane domain 354 413 IPR036640 GO:0005524|GO:0016020
Trre12g00874 699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 441 662 IPR003439 GO:0005524
Trre12g00874 699 FunFam ABC transporter C family member 5 428 670 - -
Trre12g00874 699 Pfam ABC transporter transmembrane region 165 352 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00874 699 ProSitePatterns ABC transporters family signature. 564 578 IPR017871 GO:0005524|GO:0016887
Trre12g00874 699 Pfam ABC transporter 457 591 IPR003439 GO:0005524
Trre12g00874 699 SUPERFAMILY ABC transporter transmembrane region 153 419 IPR036640 GO:0005524|GO:0016020
Trre12g00874 699 SMART AAA_5 466 639 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00874 Trre-Chr12 7976927 7979437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00874 433 686 Calmodulin-binding Proteins AT2G36910 31.868 1.89e-26 114