Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00871 ATGGTTTATGTTGCTATCCGTATGCAGAGATACTATTTTACCTTAGCGAAAGAAGTAATGCGGATAAATGGCACAACAAAATCATCGTTAGCTAATCATGTAGCTGAAACTGTTGCGGGAGCTACAACAATAAGGGCTTTTGAGGAGGAAGATCGTTCTTTTGAGAAGAACCTTGATCTAATCGATATTAATGCGAGTGCTTTTTTTCATAGTTTCGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAACCATCAGTGCAGTTGTTCTTACCGCTGCAGCACTTTGCATGGTTATGCTCCCTCCTGGAACTTTCACCTCAGGAATTATTGGGATGGCACTATCTTATGGCCTTTCATTAAACAATTCTTTAGTATTTTCGATTCAAAATCAATGCACTCTTGCAAATTACATAATATCAGTAGAGAGGCTAAATCAATATATGCATATACAAAGTGAGGCCGAAGAAATAGTAGAAGGAAATCGTCCTCCTACGAATTGGCCAGATGCAGGCAAAGTAGAAATAATTGACTTGAAGATACGATACAGATCCGATGGACCACTTGTACTTCAAGGGATCACATGCACATTTAAAGCAGGGCATAAGATTGGTATGGTTGGAAGAACATGCAGTGGGAAATCCACTCTTATTAGCGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATTGTCGTTGATGGAATAGACATCTCATCTATTGGCCTTCATGATTTGAGGTCGCGTTTTGGTGTTATACCTCAGGATCCTACCCTCTTTGACGGGACAGTAAGATATAATTTGGACCCTTTATCTCAACACACCGATCAAGAGATATGGAAGGTTCTTGGGAAGTGTCAATTGCGAGAAGTTGTCCAAGGAAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAGTTATTTTGTTTGGGGCGTGCTCTTTTGCGGAGAAGTAGGATACTGGTGTTGGACGAAGCAACTGCTTCAATCGATAATTCTACTGATCTGATTCTGCAAAAAATCATTAGGGCTGAATTTGCGGATTGTACAGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCAGTATGGTTCTCGCTATAAGTGATGGAAAACTGGCAGCGTATGACGAGCCGATGAGTTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAACTTGTCAAGGAATATTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 1260 0.4103 MVYVAIRMQRYYFTLAKEVMRINGTTKSSLANHVAETVAGATTIRAFEEEDRSFEKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCMVMLPPGTFTSGIIGMALSYGLSLNNSLVFSIQNQCTLANYIISVERLNQYMHIQSEAEEIVEGNRPPTNWPDAGKVEIIDLKIRYRSDGPLVLQGITCTFKAGHKIGMVGRTCSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFDGTVRYNLDPLSQHTDQEIWKVLGKCQLREVVQGKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKIIRAEFADCTVITVAHRIPTVMDCSMVLAISDGKLAAYDEPMSLMKREESLFRKLVKEYWSHFQSAESH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00871 419 Pfam ABC transporter 190 338 IPR003439 GO:0005524
Trre12g00871 419 SMART AAA_5 199 391 IPR003593 GO:0016887
Trre12g00871 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 406 IPR027417 -
Trre12g00871 419 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 407 - -
Trre12g00871 419 FunFam ABC transporter C family member 3 156 408 - -
Trre12g00871 419 Gene3D - 156 408 IPR027417 -
Trre12g00871 419 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 136 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00871 419 SUPERFAMILY ABC transporter transmembrane region 3 155 IPR036640 GO:0005524|GO:0016020
Trre12g00871 419 CDD ABCC_MRP_domain2 171 391 - -
Trre12g00871 419 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 173 407 IPR003439 GO:0005524
Trre12g00871 419 Gene3D ABC transporter type 1, transmembrane domain 1 155 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00871 Trre-Chr12 7939544 7941445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00871 171 419 Calmodulin-binding Proteins AT2G36910 28.740 3.67e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00871 K05666 - gmx:100787314 729.554