Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00869 ATGTGGTTTTTTTCTATGCTTATATTCTTTGTTTCTGGTATATTATGTGTTTTATCTATATCTTATGCAATTGAAAGTAAAGAATTGTCACTCAAAGTAGCTTTGGATATTATATCATTTCTAGGAGCAACTTTGTTACTATTGTGCACATACAAATCATGTAAATGTAAAGATAGTGATAGAGAAATTGATGATAGTCTTTGTACTCCTTTGAATGGTGAGTCCGATGAAAATAATCTTCCGAGCAATGTTACTAGATTTTCTGAGGCTGGATTCTTTAATAAGATTTGGTTTTGGTGGTTGAATCCGTTGATGAAAACGAGTCAAGAGAAAACACTTCAAGACGAGGATATTCCGAACTTGAGAGAGTCTGACCGAGCAGAAAATTGTTATGTTTCGTTTATGGAACAGTTAAACAGACAACGACAATGTGAACCATCGTCTCAGTCATCGGTTTTATGGACAATCGTTTCGTGCCACCGAAGTGAGATCTTTGTAACCGGATTCTTTGCTTTGCTTAAGGTACTCGCTATATCTTCAACTCCTTTACTTCTGAATGCGTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCGAATATGAAGGTTACATATTGTCGGTATCACTCTTCCTTATAAAAATCATAGAATCACTATCACAAAGACAATGGTATTTCCGCTGTAGACTTGTTGGTATGAAAGTTAGATCACTACTTAATGCAGCGATTTATAAGAAAATATTAAGGCTATCCAATTCTGCGAGAATGATTCATTCTGGTGGCGAGATAATGAATTATATGATCGTGGATGCATATAGAATTGGAGAATTTCCATTCTGGTTTCACCAGACATGGACAACAGTCCTCCAATTGTGTATTGCATTAGTAATTCTTTTTCGCACAATTGGATTAGCGACACTAGCATCATTGGCGGTGATAGTTCTAACTGTGATTTGCAATTATCCATTAGCAAAGTTACAGCACAAGTATCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTAAAGGCTAGTTCTGAAGCTCTTGTGAATATGAAAGTGTTGAAGTTATATGCATGGGAAAAACATTTTAAAAATGTTGTAGATTGCTTAAGAAATGCGGAATTAAAATTGTTATATGCAGTGCAATTAAGAAGAACTTACAATATCTTTCTCTTTTGGGCCTCGCCGATGTTGGTGTCCACTGCTTCTTTTCTAGCATGTTACTTGTTGAACGTTCCTTTGAATGCAAGTAATGCAAAAGTTGCATTTGCTCGAATTGTTAGTTTCCTTGATGCACCAGAACTGCAGGGTGAAAAATCGAAGAACAGGTGCTTCGATGAAAACCTCAAAGGCACAATTTCAATAAAATCTGCTAACTTTTCATGGGAAGGTAATGCATCAAAGGCAACACTAAGGAGCATAAATTTAGAGGTTCGACTCGGCCAAAAAGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTAGCAACAATTCTCGGAGAAGTTCCTAAAACAAAGGGAAATATTGATGTTTATGGGAGATTTGCATATGTTTCTCAAACAGCGTGGATACAAACAGGTACAATATGGGACAATATTTTGTTCGGATCTGAATTGGATGATCAAAGATATCAAGAAACACTTCAAAGGTCTTCGCTGGTAAAGGACTTTGAGTTGCTTCCCTACGGTGACCTGACTGAAATAGGCGAAAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTTGCTCGAGCTCTCTATCAGAATGCTGATATATATCTATTGGATGATCCTTTTAGTGCTGTCGATGCACATACTGCAAAAAATTTGTTTAATGAATATATCATGGAAGGACTCAAAGGGAAAACAGTCTTACTTGTGACTCATCAAGTCGACTTCCTCCCCGCTTTTGATTCGGTTTTGTTGATGTCAGACGGGGTAATCCTACAAGCTGGTCCATATAACGAGCTATTGACCTCAAGCAAAGAATTCAATGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTAAACAGAAGCTTGTCGATGTTACTTCTTCTCAGCGATACTCATCTACTCGAAAGGTTACACAAGATTTAGTAGAGAAACAGATTAAAGAAACAAATGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGAAAGGAGATGCAGGGTTGAAGCCTTACTTACAATATTTGAATCAGATGAAAGGCTATATATTCTTCTTGATGGCTTCGTTTTGTCACCTTCTTTTCGTTATTTGTCAGATATTGCAAAACTCGTGGATGGCTGCTAATGTTGACAATCCGCTTGTCAGCACATTGAAATTGATTTTAGTATATTTTCTTATCGGTGCTATTTCAACTGTTTTCTTGTTCACCAGAAGTCTACTTGTAGTTGCTTTGGGTCTTCAATCATCAAAATATTTATTTTCACAGTTGATGAACTCCCTCTTTCGTGCACCGATGTCATTTTATGACTCCACACCATTGGGAAGGATACTTAGTAGGGTCTCATCGGATATGAGCATTATGGATCTTGACATTCCATTTAGTCTCACTTTTGCTGTCGGAGGAACAATAGTTTTTTACTCTAGTCTTACAGTATTAGCAGTTGTCACATGGCAAGTCTTGATTGTGGCTATACCAATGGTTTATGTTGCTATCCGCATGCAGAGATACTATTTTACCTTAGCGAAAGAAGTAATGCGGATAAATGGCACAACAAAATCATCATTAGCTAATCATGTAGCTGAAACTGTTGCGGGAGCAGCAACAATAAGGGCTTTTGAGGAGGAAGATCGTTCTTTTGAGAAGAACCTTGATCTAATTGATATTAATGCTAGTGCTTTTTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAACAATCAGTGCGGTTGTTCTTACCGCTGCAGCACTTTGCATGGTTATGCTCCCTCCTGGAACTTTCACCTCAGGAATTATTGGGATGGCACTATCTTATGGCCTTTCTTTAAACAATTCCTTAGTATTTTCAATTCAAAATCAATGCACTCTTGCAAATTACATAATATCAGTAGAGAGGCTAAATCAATATATGCATATAAAAAGTGAGGCCGAAGAAATAGTAGAAGGAAATCGTCCTCCTACGAATTGGCCAGATGCAGGCAAAGTAGAAATAAATGACTTGAAGATACGATACAGATCCGATGGACCACTTGTACTCCATGGGATCACATGCACATTTAAAGCAGGGCATAAGATTGGTATTGTTGGAAGAACAGGCAGTGGGAAATCCACTCTTATTAGCGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATCGTAGTTGATGGAATAGACATCTCATCTATCGGCCTTCATGATTTGAGGTCGCGTTTTGGGGTTATACCTCAGGATCCTACCCTCTTTGACGGGACAGTAAGATATAATTTGGACCCTTTATCTCAACACACCGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGGAAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGAAGATGGATCGAACTGGAGCATGGGACAAAGGCAGTTATTTTGTTTGGGGCGTGCGCTTTTGAGGAGAAGTAGGATATTGGTGTTGGACGAAGCAACTGCTTCAATTGATAATTCTACTGATCTGATTCTGCAAAAAATCATTAGGGCTGAATTTGCAGATTGTACGGTGATCACAGTAGCACATAGGATACCAACTGTGATGGATTGCAGTATGGTTCTTGCTATAAGTGATGGAAAACTAGAAGAGTATGACGAGCCAATGAACTTGATGCAGAGAGAAGAATCGTTGTTCAGGAAACTTGTCAAGGAATATTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 3927 0.3838 MWFFSMLIFFVSGILCVLSISYAIESKELSLKVALDIISFLGATLLLLCTYKSCKCKDSDREIDDSLCTPLNGESDENNLPSNVTRFSEAGFFNKIWFWWLNPLMKTSQEKTLQDEDIPNLRESDRAENCYVSFMEQLNRQRQCEPSSQSSVLWTIVSCHRSEIFVTGFFALLKVLAISSTPLLLNAFILVAEGNESFEYEGYILSVSLFLIKIIESLSQRQWYFRCRLVGMKVRSLLNAAIYKKILRLSNSARMIHSGGEIMNYMIVDAYRIGEFPFWFHQTWTTVLQLCIALVILFRTIGLATLASLAVIVLTVICNYPLAKLQHKYQSKLMVAQDERLKASSEALVNMKVLKLYAWEKHFKNVVDCLRNAELKLLYAVQLRRTYNIFLFWASPMLVSTASFLACYLLNVPLNASNAKVAFARIVSFLDAPELQGEKSKNRCFDENLKGTISIKSANFSWEGNASKATLRSINLEVRLGQKVAICGEVGSGKSTLLATILGEVPKTKGNIDVYGRFAYVSQTAWIQTGTIWDNILFGSELDDQRYQETLQRSSLVKDFELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSVLLMSDGVILQAGPYNELLTSSKEFNDLVNAHKETAGSKQKLVDVTSSQRYSSTRKVTQDLVEKQIKETNGNQLIKQEEREKGDAGLKPYLQYLNQMKGYIFFLMASFCHLLFVICQILQNSWMAANVDNPLVSTLKLILVYFLIGAISTVFLFTRSLLVVALGLQSSKYLFSQLMNSLFRAPMSFYDSTPLGRILSRVSSDMSIMDLDIPFSLTFAVGGTIVFYSSLTVLAVVTWQVLIVAIPMVYVAIRMQRYYFTLAKEVMRINGTTKSSLANHVAETVAGAATIRAFEEEDRSFEKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCMVMLPPGTFTSGIIGMALSYGLSLNNSLVFSIQNQCTLANYIISVERLNQYMHIKSEAEEIVEGNRPPTNWPDAGKVEINDLKIRYRSDGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFDGTVRYNLDPLSQHTDQEIWEVLGKCQLREVVQGKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKIIRAEFADCTVITVAHRIPTVMDCSMVLAISDGKLEEYDEPMNLMQREESLFRKLVKEYWSHFQSAESH 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00869 1308 Pfam ABC transporter 471 605 IPR003439 GO:0005524
Trre12g00869 1308 FunFam ABC transporter C family member 10 435 689 - -
Trre12g00869 1308 CDD ABCC_MRP_domain2 1060 1280 - -
Trre12g00869 1308 Pfam ABC transporter 1079 1227 IPR003439 GO:0005524
Trre12g00869 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 676 IPR027417 -
Trre12g00869 1308 Pfam ABC transporter transmembrane region 165 412 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00869 1308 Pfam ABC transporter transmembrane region 747 1006 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00869 1308 CDD ABC_6TM_ABCC_D1 166 419 IPR044746 GO:0140359
Trre12g00869 1308 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1062 1296 IPR003439 GO:0005524
Trre12g00869 1308 Gene3D - 429 701 IPR027417 -
Trre12g00869 1308 ProSitePatterns ABC transporters family signature. 578 592 IPR017871 GO:0005524|GO:0016887
Trre12g00869 1308 FunFam ABC transporter C family member 3 1045 1297 - -
Trre12g00869 1308 Gene3D ABC transporter type 1, transmembrane domain 152 428 IPR036640 GO:0005524|GO:0016020
Trre12g00869 1308 CDD ABCC_MRP_domain1 453 652 - -
Trre12g00869 1308 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 88 1296 - -
Trre12g00869 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1052 1295 IPR027417 -
Trre12g00869 1308 CDD ABC_6TM_ABCC_D2 748 1037 IPR044726 GO:0140359
Trre12g00869 1308 SUPERFAMILY ABC transporter transmembrane region 735 1044 IPR036640 GO:0005524|GO:0016020
Trre12g00869 1308 SMART AAA_5 1088 1280 IPR003593 GO:0016887
Trre12g00869 1308 SMART AAA_5 480 653 IPR003593 GO:0016887
Trre12g00869 1308 FunFam ABC transporter C family member 10 148 434 - -
Trre12g00869 1308 SUPERFAMILY ABC transporter transmembrane region 153 434 IPR036640 GO:0005524|GO:0016020
Trre12g00869 1308 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 749 1025 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00869 1308 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 455 676 IPR003439 GO:0005524
Trre12g00869 1308 FunFam ABC transporter C family member 5 711 1043 - -
Trre12g00869 1308 Gene3D ABC transporter type 1, transmembrane domain 709 1044 IPR036640 GO:0005524|GO:0016020
Trre12g00869 1308 Gene3D - 1045 1297 IPR027417 -
Trre12g00869 1308 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 165 410 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00869 Trre-Chr12 7857292 7862445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00869 447 700 Calmodulin-binding Proteins AT2G36910 31.136 6.44e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00869 K05666 - gmx:100787314 2060.42