Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00868 ATGCAGCTAGTTTCTGCCATAACCAATGGATTTCTTGGGATATTGCATTTATCTTTAGGAGTTTGGTTTTTAGAAGAGATTTTAAGGAAAAATCACAAAGCATTTCCTCTTCATTGGTGGTTGCTAGAACTCATTCATGGTTTCACTTGGTTGGTTGTAAGTTTAACTGTTAGTCTTCGGATAAAACAAATCGCAAAAACATCGATGTGGTTTTTTTCTATGCTTATATTCTTTGTTTCTGGTATATTATGTGTTTTATCTATATCTTATGCAATTGAAAGTAAAGAATTGTCACTCAAAGTAGCTTTGGATATTATATCATTTCTAGGAGCAACTTTGTTACTATTGTGCACATACAAATCATGTAAATGTAAAGATAGTGATAGAGAAATTGATGATAGTCTTTGTACTCCTTTGAATGGTGAGTCCGATGAAAATAATCTTCCGAGCAATGTTACTAGATTTTCTGAGGCTGGATTCTTTAATAAGATTTGGTTTTGGTGGTTGAATCCGTTGATGAAAACGAGTCAAGAGAAAACACTTCAAGACGAGGATATTCCGAACTTGAGAGAGTCTGACCGAGCAGAAAATTGTTATGTTTCGTTTATGGAACAGTTAAACAGACAACGACAATGTGAACCATCGTCTCAGTCATCGGTTTTATGGACAATCGTTTCGTGCCACCGAAGTGAGATCTTTGTAACCGGATTCTTTGCTTTGCTTAAGGTACTCGCTATATCTTCAACTCCTTTACTTCTGAATGCGTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCGAATATGAAGGTTACATATTGTCGGTATCACTCTTCCTTATAAAAATCATAGAATCACTATCACAAAGACAATGGTATTTCCGCTGTAGACTTGTTGGTATGAAAGTTAGATCACTACTTAATGCAGCGATTTATAAGAAAATATTAAGGCTATCCAATTCTGCGAGAATGATTCATTCTGGTGGCGAGATAATGAATTATATGATCGTGGATGCATATAGAATTGGAGAATTTCCATTCTGGTTTCACCAGACATGGACAACAGTCCTCCAATTGTGTATTGCATTAGTAATTCTTTTTCGCACAATTGGATTAGCGACACTAGCATCATTGGCGGTGATAGTTCTAACTGTGATTTGCAATTATCCATTAGCAAAGTTACAGCACAAGTATCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTAAAGGCTAGTTCTGAAGCTCTTGTGAATATGAAAGTGTTGAAGTTATATGCATGGGAAAAACATTTTAAAAATGTTGTAGATTGCTTAAGAAATGCGGAATTAAAATTGTTATATGCAGTGCAATTAAGAAGAACTTACAATATCTTTCTCTTTTGGGCCTCGCCGATGTTGGTGTCCACTGCTTCTTTTCTAGCATGTTACTTGTTGAACGTTCCTTTGAATGCAAGTAATGCAAAAGTTGCATTTGCTCGAATTGTTAGTTTCCTTGATGCACCAGAACTGCAGGGTGAAAAATCGAAGAACAGGTGCTTCGATGAAAACCTCAAAGGCACAATTTCAATAAAATCTGCTAACTTTTCATGGGAAGGTAATGCATCAAAGGCAACACTAAGGAGCATAAATTTAGAGGTTCGACTCGGCCAAAAAGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTAGCAACAATTCTCGGAGAAGTTCCTAAAACAAAGGGAAATATTGATGTTTATGGGAGATTTGCATATGTTTCTCAAACAGCGTGGATACAAACAGGTACAATATGGGACAATATTTTGTTCGGATCTGAATTGGATGATCAAAGATATCAAGAAACACTTCAAAGGTCTTCGCTGGTAAAGGACTTTGAGTTGCTTCCCTACGGTGACCTGACTGAAATAGGCGAAAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTTGCTCGAGCTCTCTATCAGAATGCTGATATATATCTATTGGATGATCCTTTTAGTGCTGTCGATGCACATACTGCAAAAAATTTGTTTAATGAATATATCATGGAAGGACTCAAAGGGAAAACAGTCTTACTTGTGACTCATCAAGTCGACTTCCTCCCCGCTTTTGATTCGGTTTTGTTGATGTCAGACGGGGTAATCCTACAAGCTGGTCCATATAACGAGCTATTGACCTCAAGCAAAGAATTCAATGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTAAACAGAAGCTTGTCGATGTTACTTCTTCTCAGCGATACTCATCTACTCGAAAGGTTACACAAGATTTAGTAGAGAAACAGATTAAAGAAACAAATGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGAAAGGAGATGCAGGGTTGAAGCCTTACTTACAATATTTGAATCAGATGAAAGGCTATATATTCTTCTTGATGGCTTCGTTTTGTCACCTTCTTTTCGTTATTTGTCAGATATTGCAAAACTCGTGGATGGCTGCTAATGTTGACAATCCGCTTGTCAGCACATTGAAATTGATTTTAGTATATTTTCTTATCGGTGCTATTTCAACTGTTTTCTTGTTCACCAGAAGTCTACTTGTAGTTGCTTTGGGTCTTCAATCATCAAAATATTTATTTTCACAGTTGATGAACTCCCTCTTTCGTGCACCGATGTCATTTTATGACTCCACACCATTGGGAAGGATACTTAGTAGGGTCTCATCGGATATGAGCATTATGGATCTTGACATTCCATTTAGTCTCACTTTTGCTGTCGGAGGAACAATAGTTTTTTACTCTAGTCTTACAGTATTAGCAGTTGTCACATGGCAAGTCTTGATTGTGGCTATACCAATGGTTTATGTTGCTATCCGCATGCAGAGATACTATTTTACCTTAGCGAAAGAAGTAATGCGGATAAATGGCACAACAAAATCATCATTAGCTAATCATGTAGCTGAAACTGTTGCGGGAGCAGCAACAATAAGGGCTTTTGAGGAGGAAGATCGTTCTTTTGAGAAGAACCTTGATCTAATTGATATTAATGCTAGTGCTTTTTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAACAATCAGTGCGGTTGTTCTTACCGCTGCAGCACTTTGCATGGTTATGCTCCCTCCTGGAACTTTCACCTCAGGAATTATTGGGATGGCACTATCTTATGGCCTTTCTTTAAACAATTCCTTAGTATTTTCAATTCAAAATCAATGCACTCTTGCAAATTACATAATATCAGTAGAGAGGCTAAATCAATATATGCATATAAAAAGTGAGGCCGAAGAAATAGTAGAAGGAAATCGTCCTCCTACGAATTGGCCAGATGCAGGCAAAGTAGAAATAAATGACTTGAAGATACGATACAGATCCGATGGACCACTTGTACTCCATGGGATCACATGCACATTTAAAGCAGGGCATAAGATTGGTATTGTTGGAAGAACAGGCAGTGGGAAATCCACTCTTATTAGCGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATCGTAGTTGATGGAATAGACATCTCATCTATCGGCCTTCATGATTTGAGGTCGCGTTTTGGGGTTATACCTCAGGATCCTACCCTCTTTGACGGGACAGTAAGATATAATTTGGACCCTTTATCTCAACACACCGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGGAAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGAAGATGGATCGAACTGGAGCATGGGACAAAGGCAGTTATTTTGTTTGGGGCGTGCGCTTTTGAGGAGAAGTAGGATATTGGTGTTGGACGAAGCAACTGCTTCAATTGATAATTCTACTGATCTGATTCTGCAAAAAATCATTAGGGCTGAATTTGCAGATTGTACGGTGATCACAGTAGCACATAGGATACCAACTGTGATGGATTGCAGTATGGTTCTTGCTATAAGTGATGGAAAACTAGAAGAGTATGACGAGCCAATGAACTTGATGCAGAGAGAAGAATCGTTGTTCAGGAAACTTGTCAAGGAATATTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 4131 0.3822 MQLVSAITNGFLGILHLSLGVWFLEEILRKNHKAFPLHWWLLELIHGFTWLVVSLTVSLRIKQIAKTSMWFFSMLIFFVSGILCVLSISYAIESKELSLKVALDIISFLGATLLLLCTYKSCKCKDSDREIDDSLCTPLNGESDENNLPSNVTRFSEAGFFNKIWFWWLNPLMKTSQEKTLQDEDIPNLRESDRAENCYVSFMEQLNRQRQCEPSSQSSVLWTIVSCHRSEIFVTGFFALLKVLAISSTPLLLNAFILVAEGNESFEYEGYILSVSLFLIKIIESLSQRQWYFRCRLVGMKVRSLLNAAIYKKILRLSNSARMIHSGGEIMNYMIVDAYRIGEFPFWFHQTWTTVLQLCIALVILFRTIGLATLASLAVIVLTVICNYPLAKLQHKYQSKLMVAQDERLKASSEALVNMKVLKLYAWEKHFKNVVDCLRNAELKLLYAVQLRRTYNIFLFWASPMLVSTASFLACYLLNVPLNASNAKVAFARIVSFLDAPELQGEKSKNRCFDENLKGTISIKSANFSWEGNASKATLRSINLEVRLGQKVAICGEVGSGKSTLLATILGEVPKTKGNIDVYGRFAYVSQTAWIQTGTIWDNILFGSELDDQRYQETLQRSSLVKDFELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSVLLMSDGVILQAGPYNELLTSSKEFNDLVNAHKETAGSKQKLVDVTSSQRYSSTRKVTQDLVEKQIKETNGNQLIKQEEREKGDAGLKPYLQYLNQMKGYIFFLMASFCHLLFVICQILQNSWMAANVDNPLVSTLKLILVYFLIGAISTVFLFTRSLLVVALGLQSSKYLFSQLMNSLFRAPMSFYDSTPLGRILSRVSSDMSIMDLDIPFSLTFAVGGTIVFYSSLTVLAVVTWQVLIVAIPMVYVAIRMQRYYFTLAKEVMRINGTTKSSLANHVAETVAGAATIRAFEEEDRSFEKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCMVMLPPGTFTSGIIGMALSYGLSLNNSLVFSIQNQCTLANYIISVERLNQYMHIKSEAEEIVEGNRPPTNWPDAGKVEINDLKIRYRSDGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFDGTVRYNLDPLSQHTDQEIWEVLGKCQLREVVQGKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKIIRAEFADCTVITVAHRIPTVMDCSMVLAISDGKLEEYDEPMNLMQREESLFRKLVKEYWSHFQSAESH 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00868 1376 FunFam ABC transporter C family member 10 216 502 - -
Trre12g00868 1376 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 233 478 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00868 1376 Gene3D - 1113 1365 IPR027417 -
Trre12g00868 1376 Gene3D ABC transporter type 1, transmembrane domain 777 1112 IPR036640 GO:0005524|GO:0016020
Trre12g00868 1376 Pfam ABC transporter 539 673 IPR003439 GO:0005524
Trre12g00868 1376 FunFam ABC transporter C family member 5 779 1111 - -
Trre12g00868 1376 ProSitePatterns ABC transporters family signature. 646 660 IPR017871 GO:0005524|GO:0016887
Trre12g00868 1376 FunFam ABC transporter C family member 10 503 757 - -
Trre12g00868 1376 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 156 1364 - -
Trre12g00868 1376 SMART AAA_5 1156 1348 IPR003593 GO:0016887
Trre12g00868 1376 SMART AAA_5 548 721 IPR003593 GO:0016887
Trre12g00868 1376 CDD ABC_6TM_ABCC_D2 816 1105 IPR044726 GO:0140359
Trre12g00868 1376 SUPERFAMILY ABC transporter transmembrane region 803 1112 IPR036640 GO:0005524|GO:0016020
Trre12g00868 1376 CDD ABC_6TM_ABCC_D1 234 487 IPR044746 GO:0140359
Trre12g00868 1376 FunFam ABC transporter C family member 3 1113 1365 - -
Trre12g00868 1376 CDD ABCC_MRP_domain1 521 720 - -
Trre12g00868 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 744 IPR027417 -
Trre12g00868 1376 Pfam ABC transporter 1147 1295 IPR003439 GO:0005524
Trre12g00868 1376 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1130 1364 IPR003439 GO:0005524
Trre12g00868 1376 SUPERFAMILY ABC transporter transmembrane region 221 502 IPR036640 GO:0005524|GO:0016020
Trre12g00868 1376 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 523 744 IPR003439 GO:0005524
Trre12g00868 1376 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 817 1093 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00868 1376 CDD ABCC_MRP_domain2 1128 1348 - -
Trre12g00868 1376 Gene3D - 497 769 IPR027417 -
Trre12g00868 1376 Gene3D ABC transporter type 1, transmembrane domain 220 496 IPR036640 GO:0005524|GO:0016020
Trre12g00868 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1120 1363 IPR027417 -
Trre12g00868 1376 Pfam ABC transporter transmembrane region 815 1074 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00868 1376 Pfam ABC transporter transmembrane region 233 480 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00868 Trre-Chr12 7857292 7862649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00868 515 768 Calmodulin-binding Proteins AT2G36910 31.136 6.57e-25 111