Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00867 ATGTCTTTTACAGTTGGCAGTAGCGACCTGTCGTTCGAGGCAGCTTTAAATGTTCTATCATTTTCAGGAGCAATTTTACTTCTGTTATGCACATATAAAGCATTTAAATGTAAAGATGCTAACAGAGAAATTAATGAAACCTTATATGCTCCTTTAAATGAAGTTGATCCTATAAGAAATGTAACCCCATTTTCCAAGGCTGGATTCTTTAGTAAGATTTCGTTTTGGTGGTTGAATCCGTTGATGAAAAGTGGTCGAGACAAAACACTTCTAGACGAGGATATTCCCAAGTTAAGAGAGTTTGACCGAGCAAAAAGTTGTTATTTATCGTTTGTGGAACAGTTAAACAAACAAAAACAACATGAATCATCATCACATTCGTCGGTGTTTTGGACAATACTTTTGTGCCATCGGAGAGAGATTTTTATAACGGGACTATTTGCTTTGCTCAAGGTACTCACTCTATCTTGTGCTCCTCTACTTCTGAATGAATTTATATTAGTTGCCGAAGGTAAAATAAGTTTCAAATATCAAGGTTACGTATTGGCCGTATCACTCTTGTTTATAAAGATCATAGGATCCCTATCGCAAAGACAATGGTATTTCCGCAGTAGACTTGTTGGGATGAAAGTTAGATCACTACTTACTGCAGCCATTTATAAGAAAATGTTAAGGCTGACAAATTCTGCTAGATTGATTCACTCTAGTGGTGAGATAATGAATTATATGATTGTCGATGCTTATAGAATTGGAGAATTTCCACTTTGGTTTCATAGGACTTGGACAACAACTCTCCAACTGTGTATTACATTGGTAATACTTTTCCGCACAATTGGACTAGCAACACTAGCATCATTGGCAGTGATAATTATCACTGTGATTTACGATATTCCCCTAACAAAGTTAGAGAACAAGTTTCAAAACAATCTTAGGGTAGCACAAGATGAGAGATTAAAGGCTAGTTCTGAGGCTCTCGTGAATATGAAAGTGCTGAAGCTATATGCATGGGAAACACATTTTAAAAATGCTATAGATAACTTACGAAATGTGGAACTCAAATTGTTATCGGCTGTGCAAGTAAGAAAGGCTTACATTGTCTTTCTCTTTTGGATATCACCGGTGTTGGTATCTGCTGCTTCTTTTCTAGCATGTTACTTCCTGAAAGTTCCTTTGCATGCAAGTAATGTTTTCACCTTTATCGCAACTTTGCGCCTCGTTCAAGAACCAATTTCAAGCATTCCAGATGTTATTTCGGCGATCATTGAGGCAAAAGTTGCATTCGCTCGGATTGTTAATTTCCTTGACGCACCAGAACTGCAGAGAGAAAATATCAGGAAAAAGTGCTTCAATCATAACCTCAAAGACTCAATTTCAATAAAATGTGCTGACTTTTCATGGGAAGGAAATGCATCAAAACCAACACTAAGGAACATAAATATGGATGTTAGACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTCATAGCAACAATTCTCGGAGAAGTTTCTAAAACAAATGGAACGATTGATGTTCACGGGAAGTTTGCATATGTTGCACAAACAGCATGGATACAAACAGGCACAATACGTGAAAATATTTTGTTTGGATCTGAATTGGACGATCAAAGATATCAAGAAACACTTCAAAAGTCTTCGCTGGTAAAGGATTTTGAGTTGCTTCCCTACGGTGACCTCACTGAAATAGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTAGCTCGCGCTCTTTATCAAAATGCTGATATATATCTATTAGATGATCCATTTAGCTCTGTTGATGCACATACTGCAAAAAAATTGTTTAATGAATACATCATGGAAGGACTCAAAGAGAAAACAGTCATACTTGTGACTCATCAAGTTGAATTCCTCCCAGCCTTTGATTCTATTTTGTTGATGTCTAATGGGGAAATCCTACAAGTTGGTCCATATCAACAGCTATTGACCTCAAGCCAAGAATTCAATAACCTTGTCAATGCTCGCAAAGAGACTGCTGGTTCTGACCAACTTGCAAGTGCTACTTTTCCCCAGAGACGTTCAACATCCAGAAAGAGTATGCAAGCTTCCTTGTCGAACAAGTATAAAGCACAAAATGGAAATCGATTAATTCAGAAAGAAGAGAGAGAGAAAGGAGACACAGGATTGAAGCCTTACTTACAATATCTAAATCAGATGAAAGGCTATATATTCTTCTCTATGGCTTTTCTATCTCACCTTATTTTTGTGGTCTGTCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGATAATCCCCTTGTCAGCACATTGAAATTGATTTTAGTTTATTTCCTTATCGGTGATTTATCAACCATTTTTTTGCTCAGCAGATGTCTACTCGTAGTCACTTTAGGTCTTCAATCGTCAAAACATTTATTTTCACAGTTGATGAACTCCCTCTTTCACGCACCGATGTCATTTTATGACTCTACACCATTAGGAAGAGTATTTAGTAGGGTCTCGTCTGATCTGAGCATTCTCGATCTTGACTTGCCCTTTAGCCTCAGCTATTCAGTGGGAGCCACTATAAATTTTTATTCTACTCTTGCAGTTTCAGCAGTTTTCACATGGCAAGTCTTAATTGTGGCCATACCAATGGTTTATGTTGCTACTCGCATTCAGAGATACTACTTTGCTTCAGCAAAAGAAGTAATGAGGATGAATGGCACAACAAAGTCCTCATTAGCTAATCATGTAAATGAAACTGTTGCTGGAGCTGTAACAATAAGGGCTTTTGAGGAGGAAGATCGTTCTTTTAATAAGAACCTTGATCTAATTGATATTAATGCCAGTGCTTTTTTCCATAGTTTTGCCTCAAATGAGTGGTTAATCCAACGGTTAGAAACAATCAGTGCAGTTGTTCTTACCGCTGCAGCACTTTGCATAGTTATGTTCCCCCCCGGAACTTTCACCTCAGGAATTATTGCCATGGCTTTATCTTATGGCCTTTCACTGAACAATTCCTTAATATCTTCAATTAAAAATCAATGCACTGTTGCAAATCACATAATATCAGTAGAGAGGCTAAATCAATATATGCATATAGAAAGTGAGGCCGAAGAAATAGTAGAAGGAAATCGCCCTCCTCTGAATTGGCCAGTTGCAGGCAAAGTAGAAATAAATGACTTGAAGATATGA 3219 0.3762 MSFTVGSSDLSFEAALNVLSFSGAILLLLCTYKAFKCKDANREINETLYAPLNEVDPIRNVTPFSKAGFFSKISFWWLNPLMKSGRDKTLLDEDIPKLREFDRAKSCYLSFVEQLNKQKQHESSSHSSVFWTILLCHRREIFITGLFALLKVLTLSCAPLLLNEFILVAEGKISFKYQGYVLAVSLLFIKIIGSLSQRQWYFRSRLVGMKVRSLLTAAIYKKMLRLTNSARLIHSSGEIMNYMIVDAYRIGEFPLWFHRTWTTTLQLCITLVILFRTIGLATLASLAVIIITVIYDIPLTKLENKFQNNLRVAQDERLKASSEALVNMKVLKLYAWETHFKNAIDNLRNVELKLLSAVQVRKAYIVFLFWISPVLVSAASFLACYFLKVPLHASNVFTFIATLRLVQEPISSIPDVISAIIEAKVAFARIVNFLDAPELQRENIRKKCFNHNLKDSISIKCADFSWEGNASKPTLRNINMDVRHGQKVAICGEVGSGKSTLIATILGEVSKTNGTIDVHGKFAYVAQTAWIQTGTIRENILFGSELDDQRYQETLQKSSLVKDFELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSSVDAHTAKKLFNEYIMEGLKEKTVILVTHQVEFLPAFDSILLMSNGEILQVGPYQQLLTSSQEFNNLVNARKETAGSDQLASATFPQRRSTSRKSMQASLSNKYKAQNGNRLIQKEEREKGDTGLKPYLQYLNQMKGYIFFSMAFLSHLIFVVCQILQNSWMAANVDNPLVSTLKLILVYFLIGDLSTIFLLSRCLLVVTLGLQSSKHLFSQLMNSLFHAPMSFYDSTPLGRVFSRVSSDLSILDLDLPFSLSYSVGATINFYSTLAVSAVFTWQVLIVAIPMVYVATRIQRYYFASAKEVMRMNGTTKSSLANHVNETVAGAVTIRAFEEEDRSFNKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCIVMFPPGTFTSGIIAMALSYGLSLNNSLISSIKNQCTVANHIISVERLNQYMHIESEAEEIVEGNRPPLNWPVAGKVEINDLKI 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00867 1072 FunFam ABC transporter C family member 10 125 438 - -
Trre12g00867 1072 SUPERFAMILY ABC transporter transmembrane region 737 1045 IPR036640 GO:0005524|GO:0016020
Trre12g00867 1072 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 754 1028 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00867 1072 Gene3D - 432 703 IPR027417 -
Trre12g00867 1072 CDD ABCC_MRP_domain1 457 657 - -
Trre12g00867 1072 Gene3D ABC transporter type 1, transmembrane domain 712 1047 IPR036640 GO:0005524|GO:0016020
Trre12g00867 1072 Pfam ABC transporter transmembrane region 142 407 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00867 1072 Pfam ABC transporter transmembrane region 750 1009 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00867 1072 Gene3D ABC transporter type 1, transmembrane domain 129 431 IPR036640 GO:0005524|GO:0016020
Trre12g00867 1072 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 422 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00867 1072 ProSitePatterns ABC transporters family signature. 582 596 IPR017871 GO:0005524|GO:0016887
Trre12g00867 1072 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 64 1071 - -
Trre12g00867 1072 SMART AAA_5 484 657 IPR003593 GO:0016887
Trre12g00867 1072 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 459 680 IPR003439 GO:0005524
Trre12g00867 1072 FunFam ABC transporter C family member 10 440 693 - -
Trre12g00867 1072 Pfam ABC transporter 475 609 IPR003439 GO:0005524
Trre12g00867 1072 FunFam ABC transporter C family member 5 714 1046 - -
Trre12g00867 1072 CDD ABC_6TM_ABCC_D1 143 430 IPR044746 GO:0140359
Trre12g00867 1072 CDD ABC_6TM_ABCC_D2 747 1040 IPR044726 GO:0140359
Trre12g00867 1072 MobiDBLite consensus disorder prediction 688 714 - -
Trre12g00867 1072 SUPERFAMILY ABC transporter transmembrane region 130 438 IPR036640 GO:0005524|GO:0016020
Trre12g00867 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 679 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00867 Trre-Chr12 7851059 7855161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00867 278 713 Calmodulin-binding Proteins AT2G36910 25.478 1.82e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00867 K05666 - gmx:100787314 1563.9