Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00865 ATGCACATTTCAAGCAGCGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATTCTAGTTGATGGACTAGATATATCATCTATTGGCCTTCATGATTTGAGGCTACGTTTTGGGATCATACCTCAGGATCCTACCCTCTTCAATGGGACTGTAAAATATAATTTGGACCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGCGAAGTGTCAGTTGCGAGAAGTTGTCCAAGGGAAAGAAGATGGTTTAAACTCGTCAGTTTGTGAAGATGGGTCAAACTGGAGCATGGGGCAAAGACAGTTATTTTGTTTGGCGCGTGCTCTTTTGAGGAGAAGTAGGATATTGGTGTTGGACGAAGCAACTGCTTCAATCGATAATTCTACTGATCTGATTATGCAGAAAACTATTAGGGCTGAGTTTGCAGATTGTACGGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCAGTATGGTTCTTGCTATAAGTGATGGAAAATTGGCGGAGTATGACGAGCCAATGAACTTGATGAAGAGAGAAGAATCGTTGTTCGGGAAACTTGTCAAGGAATACTGGTCTCATTTTAAGTCTGCAGAATCGCATTGA 624 0.4199 MHISSSALFRLVEPAGGKILVDGLDISSIGLHDLRLRFGIIPQDPTLFNGTVKYNLDPLSQHTDQEIWEVLAKCQLREVVQGKEDGLNSSVCEDGSNWSMGQRQLFCLARALLRRSRILVLDEATASIDNSTDLIMQKTIRAEFADCTVITVAHRIPTVMDCSMVLAISDGKLAEYDEPMNLMKREESLFGKLVKEYWSHFKSAESH 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00865 207 Pfam ABC transporter 7 126 IPR003439 GO:0005524
Trre12g00865 207 Gene3D - 4 196 IPR027417 -
Trre12g00865 207 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 6 195 - -
Trre12g00865 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 190 IPR027417 -
Trre12g00865 207 CDD ABCC_MRP_domain2 6 179 - -
Trre12g00865 207 FunFam ATP-binding cassette (ABC) transporter, putative 4 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00865 Trre-Chr12 7850091 7851020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00865 10 195 Calmodulin-binding Proteins AT2G36910 30.319 3.05e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00865 K05666 - lja:Lj5g3v1961200.1 339.732