Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00864 ATGGGATCACATGCACATTTCAAGCAGGTCACAAGATTGGATCCTACCCTCTTCAATGGGACTGTAAAATATAATTTGGACCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGCGAAGTGTCAGTTGCGAGAAGTTGTCCAAGGGAAAGAAGATGGTTTAAACTCGTCAGTTTGTGAAGATGGGTCAAACTGGAGCATGGGGCAAAGACAGTTATTTTGTTTGGCGCGTGCTCTTTTGAGGAGAAGTAGGATATTGGTGTTGGACGAAGCAACTGCTTCAATCGATAATTCTACTGATCTGATTATGCAGAAAACTATTAGGGCTGAGTTTGCAGATTGTACGGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCAGTATGGTTCTTGCTATAAGTGATGGAAAATTGGCGGAGTATGACGAGCCAATGAACTTGATGAAGAGAGAAGAATCGTTGTTCGGGAAACTTGTCAAGGAATACTGGTCTCATTTTAAGTCTGCAGAATCGCATTGA 534 0.4232 MGSHAHFKQVTRLDPTLFNGTVKYNLDPLSQHTDQEIWEVLAKCQLREVVQGKEDGLNSSVCEDGSNWSMGQRQLFCLARALLRRSRILVLDEATASIDNSTDLIMQKTIRAEFADCTVITVAHRIPTVMDCSMVLAISDGKLAEYDEPMNLMKREESLFGKLVKEYWSHFKSAESH 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00864 177 FunFam AGAP012735-PA 46 169 - -
Trre12g00864 177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 160 IPR027417 -
Trre12g00864 177 Pfam ABC transporter 13 96 IPR003439 GO:0005524
Trre12g00864 177 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 14 165 - -
Trre12g00864 177 Gene3D - 5 166 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00864 Trre-Chr12 7850091 7851030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00864 14 165 Calmodulin-binding Proteins AT2G36910 28.571 1.26e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00864 K05666 - rvl:131299901 275.018