Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00858 ATGGCAGGAACAAGTAAGAATGTTGCAATAGGAATCGACCTAGGAACAACATATTCTTGTGTTGCAGTGTGGAGGAATGATAAGGTAGAAATCATAGTGAACGACCAAGGGAATAGAACAACACCTTCTTATGTTGCCTTCACTGACTCTCAAAGGATGATTGGTGATGCTGCTTTCAATATGGCTGCTTGCAAACCAACCAACACTGTCTTTGATGCAAAGAGGCTAATTGGTAGAAAATTTTCTGACACCATCGTTCAAAGTGATATGAAATTATGGCCATTTAAAATAATTGGCGGCCTCGATGAGAAACCCATGATTGTTGTCAATTACAACGACGAAGAAAAACAATTTTCTGCCGAGGAAATATCATCGATGGTATTGGCAAAAATGCGTGACATTGCAGAAGCTTACCTTGGATCAACAGTGAAGGATGTTGTTATAACCGTTCCTGCTTATTTCAACAATTCGCAACGCGAAGCAACTAAAGATGCTGGTGTTATTGCCGGCCTCAATGTTATGCGAATAATCAACGAGCCTACTGCAGCTGCAATTGCATATGGCCTTGACATGAAACCATTAAATCATGGACAAAGGCATGTTTTCATTTTTGATTTAGGTGGTGGAACTTTGGATGTGTCCATCGTCACATTTGACAGGGATGATATCAAAGTTAAGGCTCATTCCGGAGACACTCACCTCGGTGGACAGGATTTTGATAATACAATGGTGAACCATTTTGTGAAGGAGTTCTCGAGGAAGAATAAAATCGACATTAGTAGAGACCCAAGAGCTCTTAGGAGGTTGAAGACTGCTTGTGAGAAAGCAAAGAGGATACTTTCTTCCAATACCGACACAACCATTGAGATAGAATGTTTAAATCAAGGTATAGATTTCTACGCACCAATTAGTCGCGCAAAGTTTGAGGAACTCAACAAGAATTACTTCATCAAGTGCATGGAGATTGTCGAACAGTGTCTAATAGATAGCGGTGTGGAGAAGAGTAGCATTGATGATGTTGTCCTTGTTGGTGGCTCTACGAGGATCGTAAAATTGCAACAACTATTGAGTGATATCTTTGAGGGAAAGGAATTATGCAAAAGAATCAATGCCGATGAGGCGGTTGCATATGGTGCCGCTATCAAAGCTTCTATATTGAGTGGGGAAATTAGTGAAAACGTTCAAGATTTGAAGGAAGTCATTCCTTTATCCCTTGGATTGGAAACACATGGTGGGATCATGAGAGTGTTCCTCAAATCGAAATCAGCTTCCAAATTGATGATGATGGTATCTTACATGTCTCTACCTCGGAAAAATTCTCTGGAGTTAACAAGACAGTTAAAATAA 1347 0.4016 MAGTSKNVAIGIDLGTTYSCVAVWRNDKVEIIVNDQGNRTTPSYVAFTDSQRMIGDAAFNMAACKPTNTVFDAKRLIGRKFSDTIVQSDMKLWPFKIIGGLDEKPMIVVNYNDEEKQFSAEEISSMVLAKMRDIAEAYLGSTVKDVVITVPAYFNNSQREATKDAGVIAGLNVMRIINEPTAAAIAYGLDMKPLNHGQRHVFIFDLGGGTLDVSIVTFDRDDIKVKAHSGDTHLGGQDFDNTMVNHFVKEFSRKNKIDISRDPRALRRLKTACEKAKRILSSNTDTTIEIECLNQGIDFYAPISRAKFEELNKNYFIKCMEIVEQCLIDSGVEKSSIDDVVLVGGSTRIVKLQQLLSDIFEGKELCKRINADEAVAYGAAIKASILSGEISENVQDLKEVIPLSLGLETHGGIMRVFLKSKSASKLMMMVSYMSLPRKNSLELTRQLK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00858 448 Gene3D Actin; Chain A, domain 4 235 318 - -
Trre12g00858 448 SUPERFAMILY Actin-like ATPase domain 199 386 IPR043129 -
Trre12g00858 448 Gene3D - 10 383 - -
Trre12g00858 448 FunFam Heat shock protein 70 10 198 - -
Trre12g00858 448 PRINTS 70kDa heat shock protein signature 146 166 - -
Trre12g00858 448 PRINTS 70kDa heat shock protein signature 369 389 - -
Trre12g00858 448 PRINTS 70kDa heat shock protein signature 337 353 - -
Trre12g00858 448 PRINTS 70kDa heat shock protein signature 394 413 - -
Trre12g00858 448 PRINTS 70kDa heat shock protein signature 36 48 - -
Trre12g00858 448 PRINTS 70kDa heat shock protein signature 209 219 - -
Trre12g00858 448 PRINTS 70kDa heat shock protein signature 8 21 - -
Trre12g00858 448 Pfam Hsp70 protein 9 416 IPR013126 GO:0005524|GO:0140662
Trre12g00858 448 Gene3D - 192 366 - -
Trre12g00858 448 FunFam Heat shock 70 kDa protein 71 126 - -
Trre12g00858 448 FunFam Heat shock 70 kDa 235 318 - -
Trre12g00858 448 Gene3D - 71 126 - -
Trre12g00858 448 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Trre12g00858 448 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Trre12g00858 448 PANTHER HEAT SHOCK PROTEIN 70KDA 9 423 IPR013126 GO:0005524|GO:0140662
Trre12g00858 448 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00858 Trre-Chr12 7696177 7698641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00858 1 419 Calmodulin-binding Proteins AT3G09440 71.734 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00858 K03283 - mnt:21408981 601.668