Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00855 ATGGAACAGAAACATGTTCTTTTGTCAGCATTGAGTGTTGGTGTTGGATTAGGTGTTGGACTTGGATTGAGTTCAGGACAAACTGTTCAGAAATGGGTTGGAGGGAATCGCGATTTCGAAGAGGTTTCTGGTGAGCAGATTGTTGAAGAACTCAAGAAACTTTTGGTTGATGGAAAAGATAGCAAAGTTACATTTGACGAGTTTCCTTATTACTTAAGCGAAAGAACTCGAGTTTTGTTGACAAGTGCTGCATATGTTCATTTAAAACATCTTAACTTTTCGAAGCACACCAGAAACCTCTCACCAGCTAGCAGGGCTATTTTACTTTCTGGTCCTGCAGAACTTTATCAGCAAATGCTCGCCAAGGCTTTAGCTCATTACTTCGAGTCGAAGTTGCTATTGTTAGATATTACTGATTTCTCTCTGAAGTTGCAGAGCAGATTTGGATTTCCAAGGAAAGTACCGTCTTTGAGAAGGTCGATATCCGAGATGACTATGGAGCGAATGTCGGGTTTGTTTGGTTCGTTCTCAATGATGTCTTCAACCGGCGAAACTAGAGGAACTCTTCGTCAACAAACCGTTGATAGTTCGAATAATCCTCCAAGGCTTCGGAGGAATGCCTCTGCTGCGTCAGATCTAAGTAGCAGCTCTTCCCAAAGTGGTTCAATAAATCCAGCTCCTTTAAGACGCACAAGTAGCTTGTGTTTTGACGAAAAGCTCTTTGTGCAATCGCTTTATAAGGTTTTGGTTTCTATCTCAGGAACCGATTCCGTCATTTTATACATAAGGGATGTCGAGAAGCTTGTTCTCAGATCACCAAAGTTATTTAATTTACTACAAAAAATGATAAAGAAAATATCAGGCTCGGTATTGATACTCGGTTCTCAGATATTATTAGATTTAGAAGACGATTGCAAAGAATTAGATGAAAGGATCGGTAGGTTATTCCCTTATAACATTCAGATCAAAGCTCCTGAAGATGAAATTCACCTCGGTAGTTGGAAATGCCAACTCGAAGAAGACATGAAAATCATTCAGTTTCAAGATACTCGAAACCACATTGCTGAAGTACTTGCGGAAAATGACATTGATTGCGATGACTTGAATTCAATATGCCATGGAGACACTATGATACTTAGTAATTATATTGAAGAAATTGTTGTGTCCGCGATTTCTTACCATTTAATGAATACCAAAGAACCTGAATACCGAAACGGAAAGCTAGTTATCTCAGCAAATAGTTTGTCCCAAGGATTGAGTCTGTTCCAAGAAGGCAAGAGTAGCGGAAACCTGAAAACTAATGATTCGAATAAGGAAAATGTTGAAGATATTGCCGGTGCGAAGAATGACGTGCGGAGTGACAACCAAGCACCTGAAAACAAAAATGATACATCGATCCCTGTAACGAAAAAAGAAGGCGAAAGTTCTACGCCTGCAAAAGCGGAAGTTCCTGACAACGAGTTCGAAAAGCGAATTAGACCAGAGGTTATCCCTGCAAATGAGATAGGTGTTACATTCGCAGATATCGGTGCATTGGATGAGATAAAAGAATCACTTCAAGAGCTAGTAATGCTTCCCCTTAGAAGACCAGACCTCTTCAAAGGTGGACTTCTAAAGCCATGTAGAGGGATACTTCTTTTCGGACCTCCCGGAACCGGAAAAACAATGTTAGCAAAAGCTATTGCGAATGAAGCAGGAGCGAGTTTCATTAACGTATCAATGTCCACCATCACTTCGAAATGGTTCGGAGAAGATGAAAAGAATGTTCGAGCTTTGTTCACACTAGCAGCTAAGGTTGCTCCGACGATTATATTTGTGGATGAAGTTGATAGCATGCTCGGTCAGCGTACTCGAGTTGGAGAACATGAGGCCATGAGGAAGATTAAAAATGAATTCATGACACATTGGGATGGATTATTATCAGGACCTAATGAACAGATTCTTGTTCTTGCAGCTACAAACAGACCATTTGATCTCGATGAAGCAATTATAAGACGATTCGAACGCAGGATCATGGTTGGTCTACCATCTGTTGAGAATAGGGAAATGATACTTAAAACTCTTCTGTCAAAGGAAAAACACGACGAAAACTTAGACTTCAAAGAATTAGCAACCATGACAGAAGGATTTAGTGGAAGTGATCTTAAGAATTTGTGCATCACTGCCGCGTATCGACCTGTTAGGGAGTTAATACAGCAGGAGCGAAATAAGGAAATGGAAAAGAAGAAAAAAGAGGCCGAAAGTGTCAGCTCAGATGATGCTTCAAATAGTAATGATAACGAAGAACGAGAAATTACCTTGAGGTCATTAAACATGGAAGACATGAAACAAGCTAAGAATCAGGTTGCTGCGAGTTTTGCGTCAGAAGGATCAGTAATGGCCGAGCTAAAACAATGGAATGAATTGTACGGAGAAGGTGGTTCAAGGAAGAAACAACAACTCACATACTTCCTTTAA 2457 0.4025 MEQKHVLLSALSVGVGLGVGLGLSSGQTVQKWVGGNRDFEEVSGEQIVEELKKLLVDGKDSKVTFDEFPYYLSERTRVLLTSAAYVHLKHLNFSKHTRNLSPASRAILLSGPAELYQQMLAKALAHYFESKLLLLDITDFSLKLQSRFGFPRKVPSLRRSISEMTMERMSGLFGSFSMMSSTGETRGTLRQQTVDSSNNPPRLRRNASAASDLSSSSSQSGSINPAPLRRTSSLCFDEKLFVQSLYKVLVSISGTDSVILYIRDVEKLVLRSPKLFNLLQKMIKKISGSVLILGSQILLDLEDDCKELDERIGRLFPYNIQIKAPEDEIHLGSWKCQLEEDMKIIQFQDTRNHIAEVLAENDIDCDDLNSICHGDTMILSNYIEEIVVSAISYHLMNTKEPEYRNGKLVISANSLSQGLSLFQEGKSSGNLKTNDSNKENVEDIAGAKNDVRSDNQAPENKNDTSIPVTKKEGESSTPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSGPNEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLSKEKHDENLDFKELATMTEGFSGSDLKNLCITAAYRPVRELIQQERNKEMEKKKKEAESVSSDDASNSNDNEEREITLRSLNMEDMKQAKNQVAASFASEGSVMAELKQWNELYGEGGSRKKQQLTYFL 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00855 818 Gene3D - 676 759 - -
Trre12g00855 818 Gene3D - 503 762 IPR027417 -
Trre12g00855 818 MobiDBLite consensus disorder prediction 445 487 - -
Trre12g00855 818 ProSitePatterns AAA-protein family signature. 647 666 IPR003960 GO:0005524|GO:0016887
Trre12g00855 818 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 503 678 - -
Trre12g00855 818 Pfam AAA+ lid domain 697 740 IPR041569 -
Trre12g00855 818 Coils Coil 727 747 - -
Trre12g00855 818 Pfam ATPase family associated with various cellular activities (AAA) 544 674 IPR003959 GO:0005524|GO:0016887
Trre12g00855 818 SMART AAA_5 540 677 IPR003593 GO:0016887
Trre12g00855 818 MobiDBLite consensus disorder prediction 182 225 - -
Trre12g00855 818 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 47 817 - -
Trre12g00855 818 MobiDBLite consensus disorder prediction 458 472 - -
Trre12g00855 818 MobiDBLite consensus disorder prediction 736 762 - -
Trre12g00855 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 740 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00855 Trre-Chr12 7630812 7636382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00855 460 734 Calmodulin-binding Proteins AT3G56690 36.396 3.82e-43 167