Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00838 ATGGAGGCTTCATCTCCTACCAAGAAAAAAAACCATGATAAGGGTTCTTCCCTTGAATTAGATAATGGCCAGCCCGCCCCTAGCCCAATCGGCAAGATGATCGCCGTGGCGTCCATCGCTGCTGGTGTTCAATTCGGATGGGCTCTTCAGCTTTCTCTCCTGACCCCATATGTGCAGACTCTTGGAGTTCCGCACATATGGGCATCTTTCATTTGGCTATGTGGTCCAATCTCTGGACTTCTTGTCCAACCTATATGTGGTTATTATAGTGACCGTAGCACATGCCGGTTTGGACGTCGTCGTCCTTTCATCTTTTTTGGATCTCTCGCTGTCGCTATTTCTGTTTTCCTCATTGGATATGCTGCTGATCTCGGTCATTCATTGGGTGATGATCTTACCAAAAAAACTAGACCACGAGCTGTTGCTTTCTTCGTCGTAGGATTCTGGATCCTTGACGTGGCAAACAACATGCTCCAGGGACCGTGTCGTGCTTTCCTTGCCGACCTTGCTGCGGGCGATGAGAAAAAGACAAGAACCGCTATGGGTTTTTTCTCTTTCTTCATGGCCCTCGGTAACATCCTTGGATACGCCGCGGGTTCCTACAGCAAACTCCATAATTGGTTCCCTTTCACTGAAACTGAAGCATGTAACGTCTTCTGTGCGAATCTTAAGAGTTGCTTCTTTTTCTCCATTATACTCTTGTCAGTCCTAGCTGGTATAGCCCTCGTTGTCGTTGAGGACAAACCAATGGAGAAGCATGAGGTGAGTGATGACGACATGCCAGTTTCTTGCTTCGGAGAAATGTTCGGTGCATTGAGGGAGTTAAAGAGGCCAATGTGGATATTAATGTTGGTGACCTGCGTGAACTGGATCGCATGGTTCCCATTCTTCTTGTTCGATACCGACTGGGTGGGTCATGAGGTGTACGGAGGAGTTGCAGGAGAGCCAGCATATGACAATGGTGTGAGAGCTGGTTCTTTGGGACTTATGCTTAATGCTATTGTTCTTGCTTTCATGTCTTTGGCTGTAGAGCCATTGGGAAAAATGGTTGGAGGAATCAAAAGACTTTGGGGTATAGTTAATTTCATTCTTGCTATTGGCTTGGCAATGACTGTCGTCATTACCAAGATTGCAGAGCAAGAACGTCAGGCTAGTGGTGGTGCCACCATTGGAAATCCTTCCGAAGGTGTCAAGATCGGTGCCATGCTCTTTTTCGCAGTTCTTGGTATCCCTATGGCGATTACTTTCAGTGTTCCTTTTGCTCTAGCATCAATTTATTGCAGTGCTTCAGGTGCAGGACAAGGTTTGTCGTTGGGAGTCTTGAATCTTGCAATTGTGGTACCACAGATGTTTGTGTCAACACTAAGTGGACCTTGGGATGCTCTATTTGGTGGTGGTAATTTGCCGGCATTCGTCGTTGGTGCGGTGGCTGCCGTCATCAGTGCCATATTGGCGATGGTTATGTTGCCCTCGGTTAAACCGGACGATGAGGCCAAGGTTAAACTTGGAGGCAGTTTCCATTGA 1524 0.4731 MEASSPTKKKNHDKGSSLELDNGQPAPSPIGKMIAVASIAAGVQFGWALQLSLLTPYVQTLGVPHIWASFIWLCGPISGLLVQPICGYYSDRSTCRFGRRRPFIFFGSLAVAISVFLIGYAADLGHSLGDDLTKKTRPRAVAFFVVGFWILDVANNMLQGPCRAFLADLAAGDEKKTRTAMGFFSFFMALGNILGYAAGSYSKLHNWFPFTETEACNVFCANLKSCFFFSIILLSVLAGIALVVVEDKPMEKHEVSDDDMPVSCFGEMFGALRELKRPMWILMLVTCVNWIAWFPFFLFDTDWVGHEVYGGVAGEPAYDNGVRAGSLGLMLNAIVLAFMSLAVEPLGKMVGGIKRLWGIVNFILAIGLAMTVVITKIAEQERQASGGATIGNPSEGVKIGAMLFFAVLGIPMAITFSVPFALASIYCSASGAGQGLSLGVLNLAIVVPQMFVSTLSGPWDALFGGGNLPAFVVGAVAAVISAILAMVMLPSVKPDDEAKVKLGGSFH 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00838 507 CDD MFS_SLC45_SUC 33 485 - -
Trre12g00838 507 MobiDBLite consensus disorder prediction 1 17 - -
Trre12g00838 507 FunFam Sucrose transporter SUC2 31 252 - -
Trre12g00838 507 Gene3D MFS general substrate transporter like domains 31 490 IPR036259 -
Trre12g00838 507 MobiDBLite consensus disorder prediction 1 25 - -
Trre12g00838 507 Pfam MFS/sugar transport protein 37 292 - -
Trre12g00838 507 SUPERFAMILY MFS general substrate transporter 33 494 IPR036259 -
Trre12g00838 507 PANTHER SUGAR TRANSPORTER 31 488 - -
Trre12g00838 507 NCBIfam sucrose/proton symporter 29 494 IPR005989 GO:0005886|GO:0008515|GO:0015770
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00838 Trre-Chr12 7481592 7483648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00838 9 507 Sucrose Transporter Gene Family AT1G22710 63.851 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00838 K15378 - gmx:100784153 738.413